RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 SYCE1Q8N0S2 351 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 STK40Q8N2I9 435 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 HDDC3Q8N4P3 179 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 DEFB119Q8N690 84 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 PCDH20Q8N6Y1 951 aaKnown RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 TC2NQ8N9U0 490 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 OR14C36Q8NHC7 312 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 GRIN3AQ8TCU5 1115 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TEKT4Q8WW24 435 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 CASKIN2Q8WXE0 1202 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 EZH1Q92800 747 aaPredicted RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 TOE1Q96GM8 510 aaKnown RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 CELF6Q96J87 481 aaKnown RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 MRGPRX1Q96LB2 322 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 HSPA12BQ96MM6 686 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 GDAP1L1Q96MZ0 367 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 ALS2CR12Q96Q35 445 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 GPR174Q9BXC1 333 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TM6SF2Q9BZW4 377 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TSGA10Q9BZW7 698 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 ARRDC1-AS1Q9H2J1 176 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 ETNK1Q9HBU6 452 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 PLA2G2EQ9NZK7 142 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 IL36AQ9UHA7 158 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 TBC1D30Q9Y2I9 924 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 EPN1Q9Y6I3 576 aaPredicted RBP8.2□□□□□ -1.1
USP40-216ENST00000485943 DOCK4Q8N1I0 1966 aa8.2□□□□□ -1.1
USP40-216ENST00000485943 CEP192Q8TEP8 1941 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 IGLV3-10A0A075B6K4 115 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 A0A0D9SEW6 157 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 A0A1W2PP55 124 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SOWAHDA6NJG2 315 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 DCLK1O15075 740 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 KRT86O43790 486 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SNAP91O60641 907 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 PCDH8O95206 1070 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SEMA4FO95754 770 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SYPP08247 313 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 RARAP10276 462 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 ZFXP17010 805 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 GOT1P17174 413 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 ERCC2P18074 760 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 MX2P20592 715 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 C5AR1P21730 350 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SDHBP21912 280 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 CA4P22748 312 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 HOXC13P31276 330 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 MPLP40238 635 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 P2RY2P41231 377 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SERPINH1P50454 418 aaKnown RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 TPMTP51580 245 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 NDST2P52849 883 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 PLK1P53350 603 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 C21orf59P57076 290 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 OGDHQ02218 1023 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 LMNB2Q03252 620 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 ZNF33AQ06730 810 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SPEM2Q0P670 501 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 EIF4EBP2Q13542 120 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 CAMK2GQ13555 558 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 GRM3Q14832 879 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 CST6Q15828 149 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 POM121L1PQ3SYA9 428 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 PLK5Q496M5 336 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 OTUD1Q5VV17 481 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 TMEM215Q68D42 235 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 TIGD7Q6NT04 549 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 C22orf39Q6P5X5 142 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 PRPF39Q86UA1 669 aaKnown RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 GAS2L3Q86XJ1 694 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 MAML2Q8IZL2 1156 aaPredicted RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 NDUFAF2Q8N183 169 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SH2D3CQ8N5H7 860 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 UBL4BQ8N7F7 174 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 NIPA2Q8N8Q9 360 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 CCNYQ8ND76 341 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 CEP76Q8TAP6 659 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 ARHGEF2Q92974 986 aaKnown RBP8.19□□□□□ -1.1
USP40-216ENST00000485943 LRRC45Q96CN5 670 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 ARHGEF26Q96DR7 871 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 MYEOVQ96EZ4 313 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 LOXL4Q96JB6 756 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 HEPHQ9BQS7 1158 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SYT11Q9BT88 431 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 PACSIN1Q9BY11 444 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 CEP44Q9C0F1 390 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SLC6A17Q9H1V8 727 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 TNKS2Q9H2K2 1166 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 GRPEL1Q9HAV7 217 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SGK2Q9HBY8 427 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 PRSS16Q9NQE7 514 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 VPS45Q9NRW7 570 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 KLHL11Q9NVR0 708 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 C2orf42Q9NWW7 574 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SLCO3A1Q9UIG8 710 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 PCDHGA5Q9Y5G8 931 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 SDK1Q7Z5N4 2213 aa8.19□□□□□ -1.1
USP40-216ENST00000485943 A0A1W2PQF6 199 aa8.18□□□□□ -1.1
USP40-216ENST00000485943 TCRBV5S1A1TA0A578 114 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms