RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 IL17RCQ8NAC3 791 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 KDM1BQ8NB78 822 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 SPATA22Q8NHS9 363 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.05□□□□□ -0.8
SF3A1-207ENST00000471342 WFIKKN2Q8TEU8 576 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 CASKIN2Q8WXE0 1202 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 SPOCK2Q92563 424 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 MRGPRX2Q96LB1 330 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 PWWP2AQ96N64 755 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 NAP1L3Q99457 506 aaPredicted RBP10.05□□□□□ -0.8
SF3A1-207ENST00000471342 GABRG3Q99928 467 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 P2RY13Q9BPV8 354 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 SPON2Q9BUD6 331 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 C8orf33Q9H7E9 229 aaPredicted RBP10.05□□□□□ -0.8
SF3A1-207ENST00000471342 ETNK1Q9HBU6 452 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 NOD2Q9HC29 1040 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 GLOD4Q9HC38 313 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 PCDH9Q9HC56 1237 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 HOMER3Q9NSC5 361 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 RBM22Q9NW64 420 aaKnown RBP eCLIP10.05□□□□□ -0.8
SF3A1-207ENST00000471342 VPS28Q9UK41 221 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 SARDHQ9UL12 918 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 WASF2Q9Y6W5 498 aa10.05□□□□□ -0.8
SF3A1-207ENST00000471342 LOC285095A0A1B0GVY8 99 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CTAGE15A4D2H0 777 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 FAM187AA6NFU0 413 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 PPP1R12AO14974 1030 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 HTRA2O43464 458 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 SUN1O94901 812 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 MT-CYBP00156 380 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CTAGE8P0CG41 777 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 NFKB1P19838 968 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 PSMB4P28070 264 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 PAFAH1B1P43034 410 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CSNK1DP48730 415 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 COPAP53621 1224 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 DRG2P55039 364 aaKnown RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 OXCT1P55809 520 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 ZXDAP98168 799 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 SLC20A2Q08357 652 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 AP1B1Q10567 949 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 TRAF2Q12933 501 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 DHX34Q14147 1143 aaKnown RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 RFTN1Q14699 578 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 TRIP13Q15645 432 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 DLG2Q15700 870 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 MLF2Q15773 248 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 FAXCQ5TGI0 409 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CWF19L1Q69YN2 538 aaKnown RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 IL31Q6EBC2 164 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 HIBCHQ6NVY1 386 aaPredicted RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 RANBP10Q6VN20 620 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 DPY19L3Q6ZPD9 716 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 Q6ZS52 159 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CTAGE6Q86UF2 777 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CAND1Q86VP6 1230 aaKnown RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CTAGE4Q8IX94 777 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 ATPAF2Q8N5M1 289 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 ZNF366Q8N895 744 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CEP112Q8N8E3 955 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CCNYQ8ND76 341 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 FUBP1Q96AE4 644 aaKnown RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 CLDN23Q96B33 292 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 EID2BQ96D98 161 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 ECHDC3Q96DC8 303 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 AGAP3Q96P47 875 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 XPO6Q96QU8 1125 aaKnown RBP10.04□□□□□ -0.8
SF3A1-207ENST00000471342 ERP44Q9BS26 406 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 TXLNGYQ9BZA5 131 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 MUC3BQ9H195 1237 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 GBA3Q9H227 469 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 PRSS16Q9NQE7 514 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 ZNF148Q9UQR1 794 aa10.04□□□□□ -0.8
SF3A1-207ENST00000471342 TCF20Q9UGU0 1960 aaKnown RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 ESYT3A0FGR9 886 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 TSPAN11A1L157 253 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 CFAP69A5D8W1 941 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 SGK1O00141 431 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 TIMM44O43615 452 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 TECTAO75443 2155 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 SLU7O95391 586 aaKnown RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 KRT14P02533 472 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 C1QAP02745 245 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 SRPRAP08240 638 aaKnown RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 PDHA1P08559 390 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 HLA-EP13747 358 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 PSMA3P25788 255 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 ETFBP38117 255 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 CETN2P41208 172 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 DR1Q01658 176 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 CKAP4Q07065 602 aaKnown RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 CAMK2GQ13555 558 aaPredicted RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 EIF4HQ15056 248 aaKnown RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 PARP6Q2NL67 630 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 HNRNPA1L2Q32P51 320 aaKnown RBP10.03□□□□□ -0.8
SF3A1-207ENST00000471342 MSS51Q4VC12 460 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 MARC1Q5VT66 337 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 C22orf39Q6P5X5 142 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 TMEM92Q6UXU6 159 aa10.03□□□□□ -0.8
SF3A1-207ENST00000471342 TPRG1Q6ZUI0 275 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms