RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 LCA5LO95447 670 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ITGAVP06756 1048 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 EPHX1P07099 455 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 DLDP09622 509 aaKnown RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 PABPC1P11940 636 aaKnown RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 KRT10P13645 584 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 TACR2P21452 398 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 PSMA2P25787 234 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ACSL1P33121 698 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 SGSHP51688 502 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 COPAP53621 1224 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ACBD5Q5T8D3 534 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 RAP1GAP2Q684P5 730 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 LAYNQ6UX15 382 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ZNF574Q6ZN55 896 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ADAT2Q7Z6V5 191 aaKnown RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ADIPOR2Q86V24 386 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 TMEM139Q8IV31 216 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 CCDC117Q8IWD4 279 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 EID2Q8N6I1 236 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 HJURPQ8NCD3 748 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 RFFLQ8WZ73 363 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 BIRC7Q96CA5 298 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 HIC2Q96JB3 615 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 PRMT1Q99873 361 aaKnown RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 BAG1Q99933 345 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 DPH1Q9BZG8 443 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 TRIM7Q9C029 511 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 TRIM4Q9C037 500 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 TMEM245Q9H330 911 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 ANLNQ9NQW6 1124 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 UVRAGQ9P2Y5 699 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 INTUQ9ULD6 942 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 HEMK1Q9Y5R4 338 aaPredicted RBP12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 HS3ST4Q9Y661 456 aa12.21□□□□□ -0.45
SQSTM1-206ENST00000466342 AHCTF1Q8WYP5 2266 aa12.21□□□□□ -0.46
SQSTM1-206ENST00000466342 BOD1L1Q8NFC6 3051 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 EIF3CLB5ME19 914 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 TERTO14746 1132 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 RNF8O76064 485 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 NDUFA10O95299 355 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 C7P10643 843 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 POLR2EP19388 210 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 PRKCHP24723 683 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 CD27P26842 260 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 C21orf59P57076 290 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 CAMK2GQ13555 558 aaPredicted RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 AUHQ13825 339 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 SPA17Q15506 151 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 ARL13BQ3SXY8 428 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 MBLAC2Q68D91 279 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 MFN1Q8IWA4 741 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 LGI2Q8N0V4 545 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 LSMEM2Q8N112 164 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 DCBLD1Q8N8Z6 715 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 ZNF564Q8TBZ8 553 aaPredicted RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 SAP25Q8TEE9 199 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 SORCS1Q8WY21 1168 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 NTAN1Q96AB6 310 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 MYEOVQ96EZ4 313 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 C1orf74Q96LT6 269 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 HAPLN3Q96S86 360 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 ELF4Q99607 663 aaPredicted RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 EIF3CQ99613 913 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 FBRSQ9HAH7 460 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 TMPRSS4Q9NRS4 437 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 STIM2Q9P246 746 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 ANKMY1Q9P2S6 941 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 SUN2Q9UH99 717 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 ANAPC7Q9UJX3 599 aa12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 EPN1Q9Y6I3 576 aaPredicted RBP12.2□□□□□ -0.46
SQSTM1-206ENST00000466342 CHD5Q8TDI0 1954 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 NYNRINQ9P2P1 1898 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 VILLO15195 856 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 KLK10O43240 276 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 IPO7O95373 1038 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 ASLP04424 464 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 GP1BBP13224 206 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 CD70P32970 193 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 ADRA1BP35368 520 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 GGCXP38435 758 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 MAGEA1P43355 309 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 AIF1P55008 147 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 RPS24P62847 133 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 PIGHQ14442 188 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 FNDC3BQ53EP0 1204 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 RABGAP1LQ5R372 815 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 PRAMEF14Q5SWL7 426 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 TTC39BQ5VTQ0 682 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 FBXL22Q6P050 247 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 SCYL2Q6P3W7 929 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 RAD9BQ6WBX8 426 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 RHOT2Q8IXI1 618 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 CFAP52Q8N1V2 620 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 ARFGAP1Q8N6T3 406 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 CCDC185Q8N715 623 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 NIPA2Q8N8Q9 360 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 KDM1BQ8NB78 822 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 OR2T3Q8NH03 318 aa12.19□□□□□ -0.46
SQSTM1-206ENST00000466342 WFDC5Q8TCV5 224 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms