RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 POLR1EQ9GZS1 481 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 TKTL2Q9H0I9 626 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CLK4Q9HAZ1 481 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 NFKBIL1Q9UBC1 381 aaPredicted RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 NUDT5Q9UKK9 219 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 FAM50BQ9Y247 325 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SPATA31A1Q5TZJ5 1347 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 VWDEQ8N2E2 1590 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 TMEM150BA6NC51 233 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ZBTB14O43829 449 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 RNASEH1O60930 286 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CYP3A4P08684 503 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ITGAXP20702 1163 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CLK2P49760 499 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 DLG4P78352 724 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 UBAP2LQ14157 1087 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CRY1Q16526 586 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 MAPKAPK3Q16644 382 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 C15orf59Q2T9L4 293 aaPredicted RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 INTS5Q6P9B9 1019 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ZNF513Q8N8E2 541 aaPredicted RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 DNAJB14Q8TBM8 379 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SELENOMQ8WWX9 145 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 MYDGFQ969H8 173 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 MYLPFQ96A32 169 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 RCN3Q96D15 328 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CIPCQ9C0C6 399 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ELOVL4Q9GZR5 314 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ACP6Q9NPH0 428 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CATSPERZQ9NTU4 200 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ARL15Q9NXU5 204 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ZNF112Q9UJU3 913 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 MAPRE3Q9UPY8 281 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 USP20Q9Y2K6 914 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 DHRS12A0PJE2 317 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 DBTP11182 482 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 DGKAP23743 735 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 PTPN3P26045 913 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CYP2C18P33260 490 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 GABRB2P47870 512 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 POLD2P49005 469 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SRP54P61011 504 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CRADDP78560 199 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 PTSQ03393 145 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SFSWAPQ12872 951 aaKnown RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 ATP13A4Q4VNC1 1196 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 GPR107Q5VW38 600 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 NPNTQ6UXI9 565 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SH3BP5LQ7L8J4 393 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 AMIGO2Q86SJ2 522 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SLC9A9Q8IVB4 645 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 OFCC1Q8IZS5 231 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 REPS2Q8NFH8 660 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 SPATA20Q8TB22 786 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 RDH11Q8TC12 318 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 DNAJC19Q96DA6 116 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 BBS4Q96RK4 519 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 GORASP1Q9BQQ3 440 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 CCDC28BQ9BUN5 200 aa7.87□□□□□ -1.15
NEDD9-204ENST00000448183 FBXO6Q9NRD1 293 aaPredicted RBP7.87□□□□□ -1.15
NEDD9-204ENST00000448183 PIK3C2BO00750 1634 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 TISP43B9A030 160 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 IDH3BO43837 385 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 MLYCDO95822 493 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 ITGA2BP08514 1039 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 UQCRBP14927 111 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 TFEBP19484 476 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 LSM3P62310 102 aaKnown RBP7.86□□□□□ -1.15
NEDD9-204ENST00000448183 FMO1Q01740 532 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PRKG2Q13237 762 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 RFX4Q33E94 735 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PLEKHH3Q7Z736 793 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 SLC41A1Q8IVJ1 513 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 DEPDC4Q8N2C3 294 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 ZNF540Q8NDQ6 660 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PSMA8Q8TAA3 256 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 POP5Q969H6 163 aaKnown RBP7.86□□□□□ -1.15
NEDD9-204ENST00000448183 LENG9Q96B70 501 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 MRPL57Q9BQC6 102 aaKnown RBP7.86□□□□□ -1.15
NEDD9-204ENST00000448183 ULBP1Q9BZM6 244 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 SNCAIPQ9Y6H5 919 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 URODP06132 367 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 CDH3P22223 829 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 EPHB3P54753 998 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 IRF8Q02556 426 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 EN1Q05925 392 aaPredicted RBP7.86□□□□□ -1.15
NEDD9-204ENST00000448183 NDUFAF6Q330K2 333 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 STXBP5Q5T5C0 1151 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 CCDC80Q76M96 950 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 EIF3MQ7L2H7 374 aaKnown RBP7.86□□□□□ -1.15
NEDD9-204ENST00000448183 UNC93AQ86WB7 457 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PHF13Q86YI8 300 aaPredicted RBP7.86□□□□□ -1.15
NEDD9-204ENST00000448183 HIPK1Q86Z02 1210 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PQLC1Q8N2U9 271 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 FAM13CQ8NE31 585 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 MOSPD2Q8NHP6 518 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 GIPC3Q8TF64 312 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PPP1R14AQ96A00 147 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 PPP3R2Q96LZ3 170 aa7.86□□□□□ -1.15
NEDD9-204ENST00000448183 FAM210AQ96ND0 272 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms