RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 UBA2Q9UBT2 640 aaPredicted RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 SARDHQ9UL12 918 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 PPM1HQ9ULR3 514 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 HPCAL4Q9UM19 191 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 WASF2Q9Y6W5 498 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 PIEZO1Q92508 2521 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 ZFHX2Q9C0A1 2572 aaPredicted RBP12.64□□□□□ -0.39
USP40-205ENST00000430158 DMDP11532 3685 aa12.64□□□□□ -0.39
USP40-205ENST00000430158 CACNA1EQ15878 2313 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 THADAQ6YHU6 1953 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 TCRBV7S2A1N4TA0A589 114 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 AXIN1O15169 862 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 FANCGO15287 622 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 ALOX15BO15296 676 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 HRO43593 1189 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 SYNCRIPO60506 623 aaKnown RBP12.63□□□□□ -0.39
USP40-205ENST00000430158 GSRP00390 522 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 IGLV3-19P01714 112 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 CR2P20023 1033 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 TGM2P21980 687 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 CCNCP24863 283 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 NNMTP40261 264 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 RGRP47804 291 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 NR2C2P49116 596 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 METAP1P53582 386 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 ZNF33AQ06730 810 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 PPIDQ08752 370 aaKnown RBP12.63□□□□□ -0.39
USP40-205ENST00000430158 SLC10A7Q0GE19 358 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 ELAVL3Q14576 367 aaKnown RBP12.63□□□□□ -0.39
USP40-205ENST00000430158 IHHQ14623 411 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 STARD3Q14849 445 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 RPS6KA1Q15418 735 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 MAP7D1Q3KQU3 841 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 CARD16Q5EG05 197 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 KAZNQ674X7 775 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 ANO7Q6IWH7 933 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 SLC35F6Q8N357 371 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 PGBD5Q8N414 524 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 HMGB4Q8WW32 186 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 ALS2CR12Q96Q35 445 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 PSKH2Q96QS6 385 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 LGMNQ99538 433 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 PRRX2Q99811 253 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 MAK16Q9BXY0 300 aaKnown RBP12.63□□□□□ -0.39
USP40-205ENST00000430158 TNKS2Q9H2K2 1166 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 CD93Q9NPY3 652 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 ZSCAN32Q9NX65 697 aa12.63□□□□□ -0.39
USP40-205ENST00000430158 USP36Q9P275 1121 aaKnown RBP12.63□□□□□ -0.39
USP40-205ENST00000430158 PTPRZ1P23471 2315 aaPredicted RBP12.63□□□□□ -0.39
USP40-205ENST00000430158 GVINP1Q7Z2Y8 2422 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 H0Y858 1186 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 APOC4-APOC2K7ER74 178 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 MATN3O15232 486 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 APOC2P02655 101 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 MX2P20592 715 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 CSNK1DP48730 415 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 DYNLT1P63172 113 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 RFTN1Q14699 578 aaPredicted RBP12.62□□□□□ -0.39
USP40-205ENST00000430158 PRKD1Q15139 912 aaPredicted RBP12.62□□□□□ -0.39
USP40-205ENST00000430158 MYLK3Q32MK0 819 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 ACCSLQ4AC99 568 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 ZNF569Q5MCW4 686 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 ATXN7L2Q5T6C5 722 aaPredicted RBP12.62□□□□□ -0.39
USP40-205ENST00000430158 TMCO4Q5TGY1 634 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 HEATR6Q6AI08 1181 aaKnown RBP12.62□□□□□ -0.39
USP40-205ENST00000430158 LONP2Q86WA8 852 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 CCDC50Q8IVM0 306 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 C17orf53Q8N3J3 647 aaPredicted RBP12.62□□□□□ -0.39
USP40-205ENST00000430158 ATPAF2Q8N5M1 289 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 FRMD1Q8N878 549 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 TSEN2Q8NCE0 465 aaKnown RBP12.62□□□□□ -0.39
USP40-205ENST00000430158 TMIEQ8NEW7 156 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 IL12RB2Q99665 862 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 MFRPQ9BY79 579 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 CARD9Q9H257 536 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 ITM2CQ9NQX7 267 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 LHX6Q9UPM6 363 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 JRKLQ9Y4A0 524 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 HEY1Q9Y5J3 304 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 TRPM6Q9BX84 2022 aa12.62□□□□□ -0.39
USP40-205ENST00000430158 GOLGA6L9A6NEM1 432 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 INSIG1O15503 277 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 ALDH1A2O94788 518 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 CHRNA3P32297 505 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 DRD3P35462 400 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 P2RY2P41231 377 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 DNA2P51530 1060 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 CCNHP51946 323 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 NRLP54845 237 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 IFI35P80217 286 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 ZBTB16Q05516 673 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 NSUN2Q08J23 767 aaKnown RBP eCLIP12.61□□□□□ -0.39
USP40-205ENST00000430158 HNRNPDQ14103 355 aaKnown RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 LBRQ14739 615 aaKnown RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 PDK1Q15118 436 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 NOMO1Q15155 1222 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 SIX1Q15475 284 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 FAM182AQ5T1J6 154 aa12.61□□□□□ -0.39
USP40-205ENST00000430158 ZNF776Q68DI1 518 aaPredicted RBP12.61□□□□□ -0.39
USP40-205ENST00000430158 ALG1LQ6GMV1 187 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms