RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 LLGL1Q15334 1064 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 CYTH1Q15438 398 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 ELF2Q15723 593 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 INO80DQ53TQ3 878 aaPredicted RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 CARD16Q5EG05 197 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 PMS2CLQ68D20 193 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 SLC9A4Q6AI14 798 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 SPOCD1Q6ZMY3 1216 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 ARMCX6Q7L4S7 300 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 ASCL5Q7RTU5 278 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 NT5DC3Q86UY8 548 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 C11orf74Q86VG3 221 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 CCDC50Q8IVM0 306 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 AADATQ8N5Z0 425 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 PLD5Q8N7P1 536 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 OR2AP1Q8NGE2 309 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 PIP4K2CQ8TBX8 421 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 GANCQ8TET4 914 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 CASKIN2Q8WXE0 1202 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 ISG20Q96AZ6 181 aaKnown RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 FAM122AQ96E09 287 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 TOE1Q96GM8 510 aaKnown RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 GDAP1L1Q96MZ0 367 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 DUSP15Q9H1R2 295 aaPredicted RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 ZDHHC6Q9H6R6 413 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 LZTFL1Q9NQ48 299 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 ITM2CQ9NQX7 267 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 IL36AQ9UHA7 158 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 PACSIN2Q9UNF0 486 aaPredicted RBP12.69□□□□□ -0.38
SKA1-203ENST00000417656 PPP2R2CQ9Y2T4 447 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.69□□□□□ -0.38
SKA1-203ENST00000417656 WASF2Q9Y6W5 498 aa12.69□□□□□ -0.38
SKA1-203ENST00000417656 hCG_1818297A0A087WSY0 165 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 KPNA3O00505 521 aaPredicted RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 APOL1O14791 398 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 RNASEH2AO75792 299 aaKnown RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 IGSF6O95976 241 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 KRT10P13645 584 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 C5AR1P21730 350 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 GKP32189 559 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 DRD3P35462 400 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 GARSP41250 739 aaKnown RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 SNRPD1P62314 119 aaKnown RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 TAZQ16635 292 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 TMCO4Q5TGY1 634 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 KAZNQ674X7 775 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 LAIR1Q6GTX8 287 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 NPNTQ6UXI9 565 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 SLC36A4Q6YBV0 504 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 PEX26Q7Z412 305 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 TMEFF1Q8IYR6 380 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 SYCE1Q8N0S2 351 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 HDDC3Q8N4P3 179 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 DEFB119Q8N690 84 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 EXD1Q8NHP7 514 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 LRRN4Q8WUT4 740 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 ALG3Q92685 438 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 RBM41Q96IZ5 413 aaKnown RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 ZC3H10Q96K80 434 aaKnown RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 ZNF830Q96NB3 372 aaPredicted RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 HEPHQ9BQS7 1158 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 CINPQ9BW66 212 aaPredicted RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 OCEL1Q9H607 264 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 FBXL12Q9NXK8 326 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 WSB2Q9NYS7 404 aaPredicted RBP12.68□□□□□ -0.38
SKA1-203ENST00000417656 DTLQ9NZJ0 730 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 AMFRQ9UKV5 643 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 PPM1HQ9ULR3 514 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 SCML1Q9UN30 329 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 PCDHA3Q9Y5H8 950 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 NUMA1Q14980 2115 aa12.68□□□□□ -0.38
SKA1-203ENST00000417656 ATXN2Q99700 1313 aaKnown RBP12.67□□□□□ -0.38
SKA1-203ENST00000417656 ABCA7Q8IZY2 2146 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 ANKRD36A6QL64 1941 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 CCDC66A2RUB6 948 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 KRIT1O00522 736 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 INSIG1O15503 277 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 GFRA3O60609 400 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 MAFKO60675 156 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 NDUFS2O75306 463 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 LEFTY1O75610 366 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 RHOBTB1O94844 696 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 ZRANB2O95218 330 aaKnown RBP eCLIP12.67□□□□□ -0.38
SKA1-203ENST00000417656 PEX11BO96011 259 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 PRNPP04156 253 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 OXTRP30559 389 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 ACSL1P33121 698 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 RGRP47804 291 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 DHPSP49366 369 aaPredicted RBP12.67□□□□□ -0.38
SKA1-203ENST00000417656 SLC10A7Q0GE19 358 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 SLC10A2Q12908 348 aaPredicted RBP12.67□□□□□ -0.38
SKA1-203ENST00000417656 LBRQ14739 615 aaKnown RBP12.67□□□□□ -0.38
SKA1-203ENST00000417656 ARSIQ5FYB1 569 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 TFDP3Q5H9I0 405 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 FAM46CQ5VWP2 391 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 USP30Q70CQ3 517 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 LPCAT2Q7L5N7 544 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 RCOR2Q8IZ40 523 aa12.67□□□□□ -0.38
SKA1-203ENST00000417656 RNF10Q8N5U6 811 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms