RNA–Protein interactions for RNA: ENST00000398738.2

PTCHD4-202, Transcript of patched domain containing 4, humanhuman

TSL 1 (best)

Gene PTCHD4, Length 3,232 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-202ENST00000398738 MKS1Q9NXB0 559 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 GGA3Q9NZ52 723 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 DTLQ9NZJ0 730 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 TLK1Q9UKI8 766 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 PRPF19Q9UMS4 504 aaKnown RBP10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 RUVBL2Q9Y230 463 aaKnown RBP10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 ADGRA2Q96PE1 1338 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 NEMP2A6NFY4 417 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 POLBP06746 335 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 ZNF23P17027 643 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 CYP3A5P20815 502 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 GNL1P36915 607 aaPredicted RBP10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 PPARGP37231 505 aaPredicted RBP10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 CNTN2Q02246 1040 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 POU5F1BQ06416 359 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 CDK18Q07002 472 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 AGKQ53H12 422 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 FGD3Q5JSP0 725 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 CERCAMQ5T4B2 595 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 C1QTNF12Q5T7M4 302 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 IFNEQ86WN2 208 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 TMEM102Q8N9M5 508 aaPredicted RBP10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 KCTD4Q8WVF5 259 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 TSNARE1Q96NA8 513 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 LHX5Q9H2C1 402 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 RPF1Q9H9Y2 349 aaKnown RBP10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 OLAHQ9NV23 265 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 EGFL7Q9UHF1 273 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 SIX4Q9UIU6 781 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 AP4E1Q9UPM8 1137 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 GINS2Q9Y248 185 aa10.03□□□□□ -0.8
PTCHD4-202ENST00000398738 G3V2L1 256 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ATE1O95260 518 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 TGM2P21980 687 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 GLDCP23378 1020 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 EEF1B2P24534 225 aaKnown RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ARL2P36404 184 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 GRIA3P42263 894 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 SULT2A1Q06520 285 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 USP10Q14694 798 aaKnown RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 TIFABQ6ZNK6 161 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 TMEM26Q6ZUK4 368 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 CCDC185Q8N715 623 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 OR9I1Q8NGQ6 314 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 RP9Q8TA86 221 aaKnown RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 URGCPQ8TCY9 931 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ARNTL2Q8WYA1 636 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ISOC1Q96CN7 298 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 TBC1D23Q9NUY8 699 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 KLHL8Q9P2G9 620 aaPredicted RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 COPG1Q9Y678 874 aaKnown RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 SH3PXD2BA1X283 911 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 BCAS2O75934 225 aaPredicted RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 CD247P20963 164 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 CNTFP26441 200 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 SPRP35270 261 aaPredicted RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 KPNA1P52294 538 aaPredicted RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 C21orf59P57076 290 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 CTBSQ01459 385 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 GNA12Q03113 381 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 IFRD2Q12894 506 aaPredicted RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 TRAF2Q12933 501 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 PLCL1Q15111 1095 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 PDK2Q15119 407 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 JADE1Q6IE81 842 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ELMSAN1Q6PJG2 1045 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 NCCRP1Q6ZVX7 275 aaPredicted RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 PGAM4Q8N0Y7 254 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 BBS5Q8N3I7 341 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ARL10Q8N8L6 244 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 ACMSDQ8TDX5 336 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 DCPSQ96C86 337 aaKnown RBP10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 GPRASP2Q96D09 838 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 FAIMQ9NVQ4 179 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 MTMR10Q9NXD2 777 aa10.02□□□□□ -0.81
PTCHD4-202ENST00000398738 C1orf232A0A0U1RR37 186 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 PRSS51A0A1B0GVH4 220 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 LACTBL1A8MY62 500 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 H3BNH8 94 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 MATN2O00339 956 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 SOCS2O14508 198 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 ZBTB24O43167 697 aaPredicted RBP10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 FAM189A1O60320 539 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 MSCO60682 206 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 GPC4O75487 556 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 ADORA2BP29275 332 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 NIPAL4Q0D2K0 466 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 ITGADQ13349 1161 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 DCAF6Q58WW2 860 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 TREML2Q5T2D2 321 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 ZNF280DQ6N043 979 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 TICAM1Q8IUC6 712 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 CHERPQ8IWX8 916 aaKnown RBP10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 CBR4Q8N4T8 237 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 FIBCD1Q8N539 461 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 APBB2Q92870 758 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 ITPKCQ96DU7 683 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 P2RY11Q96G91 374 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 HPDLQ96IR7 371 aa10.01□□□□□ -0.81
PTCHD4-202ENST00000398738 POLR1BQ9H9Y6 1135 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms