RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ELK3P41970 407 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 MRPS22P82650 360 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 LGI2Q8N0V4 545 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 RP9Q8TA86 221 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 TCP10LQ8TDR4 215 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 S100ZQ8WXG8 99 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 DLG3Q92796 817 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 RERGQ96A58 199 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 NSUN4Q96CB9 384 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ITCHQ96J02 903 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ERGIC2Q96RQ1 377 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 FNDC11Q9BVV2 318 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 KCNN2Q9H2S1 579 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 C12orf4Q9NQ89 552 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 TRMT13Q9NUP7 481 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 OR10H3O60404 316 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 XYLBO75191 536 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ANXA5P08758 320 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 RFX4Q33E94 735 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ZIK1Q3SY52 487 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 C4orf46Q504U0 113 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ARHGAP36Q6ZRI8 547 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 PCDH20Q8N6Y1 951 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 FBXO25Q8TCJ0 367 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 CXorf40AQ8TE69 158 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 MMADHCQ9H3L0 296 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 PCDH9Q9HC56 1237 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 PIH1D1Q9NWS0 290 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 URADA6NGE7 173 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 MED24O75448 989 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 FXR2P51116 673 aaKnown RBP eCLIP10.5□□□□□ -0.732e-6■■■■■ 27.8
CLIP1-201ENST00000302528 OVOS1Q6IE37 1185 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 STK40Q8N2I9 435 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 PCSK9Q8NBP7 692 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ENGASEQ8NFI3 743 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 PNMA5Q96PV4 448 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ZDHHC6Q9H6R6 413 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 NECTIN3Q9NQS3 549 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 TRHDEQ9UKU6 1024 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 RAB23Q9ULC3 237 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ARHGEF40Q8TER5 1519 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 A0A1W2PQ72 361 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 LDOC1O95751 146 aaPredicted RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ATP5BP06576 529 aaKnown RBP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 AP1S1P61966 158 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 GRSF1Q12849 480 aaKnown RBP eCLIP10.5□□□□□ -0.73
CLIP1-201ENST00000302528 GALNTL5Q7Z4T8 443 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 MCEMP1Q8IX19 187 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ACTL9Q8TC94 416 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 ATL1Q8WXF7 558 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 SYT15Q9BQS2 421 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 SLC4A5Q9BY07 1137 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 STARD7Q9NQZ5 370 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 DHRS7Q9Y394 339 aa10.5□□□□□ -0.73
CLIP1-201ENST00000302528 FAM228BP0C875 321 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PTPRMP28827 1452 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 SERPINA4P29622 427 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PTPN11Q06124 597 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 HYIQ5T013 277 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 BICRALQ6AI39 1079 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 ANKRD13AQ8IZ07 590 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 HTR3CQ8WXA8 447 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 KCNS3Q9BQ31 491 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 NKIRAS2Q9NYR9 191 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CKLFQ9UBR5 152 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 GPN3Q9UHW5 284 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 C3orf18Q9UK00 162 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CORO2BQ9UQ03 480 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 DCLK1O15075 740 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PLIN3O60664 434 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PROCP04070 461 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 RPLP2P05387 115 aaKnown RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CDK7P50613 346 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PTPN5P54829 565 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 TNK2Q07912 1038 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 SPESP1Q6UW49 350 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 STOX1Q6ZVD7 989 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 SERPINB11Q96P15 392 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 ALDH8A1Q9H2A2 487 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CYP3A43Q9HB55 503 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CISHQ9NSE2 258 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 RRN3Q9NYV6 651 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 ZNF214Q9UL59 606 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CLEC4AQ9UMR7 237 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 SNCAIPQ9Y6H5 919 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CRB1P82279 1406 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 TRIM64A6NGJ6 449 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 GRIN3BO60391 1043 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 RSL1D1O76021 490 aaKnown RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 IGKV5-2P06315 115 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 FBXO47Q5MNV8 452 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PPM1LQ5SGD2 360 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 CES3Q6UWW8 571 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PAGE2Q7Z2X7 111 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 PARGQ86W56 976 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 TRPV1Q8NER1 839 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 GMCL1Q96IK5 515 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 RUSC1Q9BVN2 902 aa10.49□□□□□ -0.73
CLIP1-201ENST00000302528 TTLL2Q9BWV7 592 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms