RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 PPP4CP60510 307 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 PUDPQ08623 228 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SAMD7Q7Z3H4 446 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 RBM7Q9Y580 266 aaKnown RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 SPIRE1Q08AE8 756 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ZNF276Q8N554 614 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 DHRSXQ8N5I4 330 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ATXN2LQ8WWM7 1075 aaKnown RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 ABHD16BQ9H3Z7 469 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 TMEM138Q9NPI0 162 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 PCDHA3Q9Y5H8 950 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 PCDHA11Q9Y5I1 949 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 QSOX1O00391 747 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 GIT2Q14161 759 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 FSCN1Q16658 493 aaKnown RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 PYDC2Q56P42 97 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 FAM46CQ5VWP2 391 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 EEF1AKMT1Q8WVE0 214 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 MRPL57Q9BQC6 102 aaKnown RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 MORF4L1Q9UBU8 362 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SLC27A6Q9Y2P4 619 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ADCY6O43306 1168 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 IRAK1P51617 712 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 PTENP60484 403 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 STOX1Q6ZVD7 989 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 HIST2H2ABQ8IUE6 130 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 ZDHHC13Q8IUH4 622 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ATP13A3Q9H7F0 1226 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 MED12Q93074 2177 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 CHST10O43529 356 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 CSF1RP07333 972 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 PHYKPLQ8IUZ5 450 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 OXNAD1Q96HP4 312 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 COG5Q9UP83 839 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 BTN3A1O00481 513 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SPDYCQ5MJ68 293 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SYT12Q8IV01 421 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 CDH9Q9ULB4 789 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ZNF510Q9Y2H8 683 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 C1orf232A0A0U1RR37 186 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 PLK4O00444 970 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 MRASO14807 208 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 MAP3K6O95382 1288 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 MBTD1Q05BQ5 628 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 TRIM40Q6P9F5 258 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 FTHL17Q9BXU8 183 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 CYLDQ9NQC7 956 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ING4Q9UNL4 249 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ULK1O75385 1050 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 RSPH9Q9H1X1 276 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 ZDHHC9Q9Y397 364 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ZSCAN5CA6NGD5 496 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 ATN1P54259 1190 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 SULT2A1Q06520 285 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ST3GAL1Q11201 340 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 BICRALQ6AI39 1079 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 MCOLN2Q8IZK6 566 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SYTL5Q8TDW5 730 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 SELENOMQ8WWX9 145 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 CD101Q93033 1021 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 FDXACB1Q9BRP7 624 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 PRRG4Q9BZD6 226 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SPATC1LQ9H0A9 340 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 ZDHHC6Q9H6R6 413 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 H2AFXP16104 143 aaPredicted RBP9.43□□□□□ -0.9
CUX1-201ENST00000292535 CHKAP35790 457 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 SLC39A12Q504Y0 691 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 NELL1Q92832 810 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 TAAR1Q96RJ0 339 aa9.43□□□□□ -0.9
CUX1-201ENST00000292535 USP17L7P0C7H9 530 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 SLC47A2Q86VL8 602 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 PDLIM2Q96JY6 352 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 FTH1P02794 183 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 PPM1AP35813 382 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 OMPP47874 163 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 CACNA2D1P54289 1103 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 PPIDQ08752 370 aaKnown RBP9.42□□□□□ -0.9
CUX1-201ENST00000292535 PARP6Q2NL67 630 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 CCDC167Q9P0B6 97 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 DNMT3LQ9UJW3 386 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 TRPV2Q9Y5S1 764 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 ABCA4P78363 2273 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 ZNF609O15014 1411 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 A0A0X1KG70 313 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 SMU1Q2TAY7 513 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 FIGNQ5HY92 759 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 DNAJC14Q6Y2X3 702 aaPredicted RBP9.42□□□□□ -0.9
CUX1-201ENST00000292535 PHC3Q8NDX5 983 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 PRMT6Q96LA8 375 aaPredicted RBP9.42□□□□□ -0.9
CUX1-201ENST00000292535 ASTN2O75129 1339 aaPredicted RBP9.42□□□□□ -0.9
CUX1-201ENST00000292535 A0A1W2PQ72 361 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 PTGES3LE9PB15 166 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 TEX46H3BTG2 121 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 SNAP91O60641 907 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 CHRNGP07510 517 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 SEC24CP53992 1094 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 OASLQ15646 514 aaKnown RBP9.42□□□□□ -0.9
CUX1-201ENST00000292535 RFTN2Q52LD8 501 aaPredicted RBP9.42□□□□□ -0.9
CUX1-201ENST00000292535 SLC27A1Q6PCB7 646 aa9.42□□□□□ -0.9
CUX1-201ENST00000292535 KAT5Q92993 513 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms