RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 MAP1SQ66K74 1059 aaPredicted RBP19.37■□□□□ 0.69
UPF1-201ENST00000262803 SLC9A9Q8IVB4 645 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 SHC3Q92529 594 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 ZNF112Q9UJU3 913 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 A0A0A0MRY4 1105 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 BTN3A1O00481 513 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MAFO75444 373 aaPredicted RBP19.37■□□□□ 0.69
UPF1-201ENST00000262803 KRT75O95678 551 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MLH1P40692 756 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 ELF3P78545 371 aaPredicted RBP19.37■□□□□ 0.69
UPF1-201ENST00000262803 DCLRE1AQ6PJP8 1040 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 TXNDC11Q6PKC3 985 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 SPATA13Q96N96 652 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MLPHQ9BV36 600 aaPredicted RBP19.37■□□□□ 0.69
UPF1-201ENST00000262803 RHBDL2Q9NX52 303 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 BTBD7Q9P203 1132 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 RPTORQ8N122 1335 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 A0A1W2PQ67 120 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 TBC1D3BA6NDS4 549 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 DLGAP3O95886 979 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 DRG2P55039 364 aaKnown RBP19.37■□□□□ 0.69
UPF1-201ENST00000262803 VSIG10LQ86VR7 867 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 SNX32Q86XE0 403 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 ZYG11BQ9C0D3 744 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 ETNK2Q9NVF9 386 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MRASO14807 208 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 ENO2P09104 434 aaPredicted RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 CRYBB1P53674 252 aaPredicted RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 FOXR2Q6PJQ5 311 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 DEFB132Q7Z7B7 95 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 TMEM161BQ8NDZ6 487 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 FAM124BQ9H5Z6 455 aaPredicted RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 LRRC19Q9H756 370 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 ARL15Q9NXU5 204 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 LIASO43766 372 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 LTA4HP09960 611 aaKnown RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 UBA1P22314 1058 aaKnown RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 STX4Q12846 297 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 KLHL35Q6PF15 583 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 MSL3Q8N5Y2 521 aaKnown RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 SPATA20Q8TB22 786 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 SEMA4DQ92854 862 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 S100A13Q99584 98 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 ECDO95905 644 aaPredicted RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 ME2P23368 584 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 FMO1Q01740 532 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 C15orf59Q2T9L4 293 aaPredicted RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 ATP13A4Q4VNC1 1196 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 STXBP5Q5T5C0 1151 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 YTHDF3Q7Z739 585 aaKnown RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 RDH11Q8TC12 318 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 TIFAQ96CG3 184 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 SLC4A9Q96Q91 983 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 HGH1Q9BTY7 390 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 GLIS2Q9BZE0 524 aaPredicted RBP19.36■□□□□ 0.69
UPF1-201ENST00000262803 KCNK4Q9NYG8 393 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 WNT7AO00755 349 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 C16orf46Q6P387 395 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 RD3Q7Z3Z2 195 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 SEPHS2Q99611 448 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 ACTL7BQ9Y614 415 aa19.36■□□□□ 0.69
UPF1-201ENST00000262803 SRRM3A6NNA2 597 aaPredicted RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 WBP4O75554 376 aaKnown RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 CYP7B1O75881 506 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 SP3Q02447 781 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 DUPD1Q68J44 220 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 INPP4AQ96PE3 977 aaPredicted RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 SMPD4Q9NXE4 827 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 REXO2Q9Y3B8 237 aaKnown RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 CCDC130P13994 396 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 BDNFP23560 247 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 ADCYAP1R1P41586 468 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 ZNF143P52747 638 aaPredicted RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 IL5RAQ01344 420 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 IRF2BP2Q7Z5L9 587 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 TOP6BLQ8N6T0 577 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 LRRC52Q8N7C0 313 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 SCAIQ8N9R8 606 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 CXorf40BQ96DE9 158 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 CDHR5Q9HBB8 845 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 RWDD3Q9Y3V2 267 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 BCLAF3A2AJT9 711 aaKnown RBP19.35■□□□□ 0.69
UPF1-201ENST00000262803 KCNH1O95259 989 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 PROCP04070 461 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 HIST1H2ABP04908 130 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 PCSK2P16519 638 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 HIST3H2AQ7L7L0 130 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 HIST1H2ACQ93077 130 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 PPP3R2Q96LZ3 170 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 CDRT15Q96T59 188 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 GINS4Q9BRT9 223 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 ZDHHC6Q9H6R6 413 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 FANCEQ9HB96 536 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 ATP6V1HQ9UI12 483 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 RPS6KA6Q9UK32 745 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 FAM25AB3EWG3 89 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 FAM25CB3EWG5 89 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 FAM25GB3EWG6 89 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 SLC28A1O00337 649 aa19.35■□□□□ 0.69
UPF1-201ENST00000262803 GLRA2P23416 452 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms