RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TMA16Q96EY4 203 aaKnown RBP17.16■□□□□ 0.34
CLN3-252ENST00000636907 PPP1R2P1Q96PQ5 205 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 CYTH2Q99418 400 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 SPON2Q9BUD6 331 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 PRKD2Q9BZL6 878 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 TASP1Q9H6P5 420 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 PPCSQ9HAB8 311 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 FETUBQ9UGM5 382 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 SLC24A2Q9UI40 661 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 CCL26Q9Y258 94 aa17.16■□□□□ 0.34
CLN3-252ENST00000636907 NOTCH4Q99466 2003 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 HELZP42694 1942 aaKnown RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 CCDC195A0A1B0GUA6 201 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 TYW5A2RUC4 315 aaKnown RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 FOXO6A8MYZ6 492 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 KDELR3O43731 214 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 C1QAP02745 245 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 GLDCP23378 1020 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 STX2P32856 288 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 OXCT1P55809 520 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 PPP2R2AP63151 447 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 SKOR1P84550 965 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 GABPB1Q06547 395 aaPredicted RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 ITKQ08881 620 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 NIPAL4Q0D2K0 466 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 TMED2Q15363 201 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 KBTBD12Q3ZCT8 623 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 ARHGAP15Q53QZ3 475 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 PPP2R2DQ66LE6 453 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 STEAP4Q687X5 459 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 GRASPQ7Z6J2 395 aaPredicted RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 LINC00523Q86TU6 105 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 EXOC3L1Q86VI1 746 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 CARNMT1Q8N4J0 409 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 IPMKQ8NFU5 416 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 GSDMBQ8TAX9 411 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 SH3RF2Q8TEC5 729 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 GDPD5Q8WTR4 605 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 IMP4Q96G21 291 aaKnown RBP17.15■□□□□ 0.34
CLN3-252ENST00000636907 ZNF599Q96NL3 588 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 PAFAH2Q99487 392 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 GDF15Q99988 308 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 TBL1YQ9BQ87 522 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 DHRS4Q9BTZ2 278 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 ATP13A1Q9HD20 1204 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 DPP7Q9UHL4 492 aa17.15■□□□□ 0.34
CLN3-252ENST00000636907 LUC7L3O95232 432 aaKnown RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 POU2F2P09086 479 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 PGAM1P18669 254 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 ATP5DP30049 168 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 ADRA1AP35348 466 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 AVPR1AP37288 418 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 DSC2Q02487 901 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 CDH17Q12864 832 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 FSCBQ5H9T9 825 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 COL13A1Q5TAT6 717 aaPredicted RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 RNF219Q5W0B1 726 aaPredicted RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 TRMT10BQ6PF06 316 aaKnown RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 CPXM2Q8N436 756 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 TDRD5Q8NAT2 981 aaKnown RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 MRGPRX2Q96LB1 330 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 FICDQ9BVA6 458 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 ACE2Q9BYF1 805 aaPredicted RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 MUC3BQ9H195 1237 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 TLE6Q9H808 572 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 BFARQ9NZS9 450 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 PSMC3IPQ9P2W1 217 aaPredicted RBP17.14■□□□□ 0.33
CLN3-252ENST00000636907 MSRAQ9UJ68 235 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 ACTL7AQ9Y615 435 aa17.14■□□□□ 0.33
CLN3-252ENST00000636907 EPOPA6NHQ4 379 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 H0Y626 953 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 PMPCBO75439 489 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 PRKCHP24723 683 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 CD86P42081 329 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 PPARDQ03181 441 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 MPP3Q13368 585 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 RASA2Q15283 850 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 CERCAMQ5T4B2 595 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 KDELC1Q6UW63 502 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 CCNJLQ8IV13 435 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 ARFGAP2Q8N6H7 521 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 RIN3Q8TB24 985 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 ARRDC2Q8TBH0 407 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 WFDC5Q8TCV5 224 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 USP13Q92995 863 aaPredicted RBP17.13■□□□□ 0.33
CLN3-252ENST00000636907 BHMTQ93088 406 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 LMAN2LQ9H0V9 348 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 UBA2Q9UBT2 640 aaPredicted RBP17.13■□□□□ 0.33
CLN3-252ENST00000636907 TTC24A2A3L6 582 aaPredicted RBP17.13■□□□□ 0.33
CLN3-252ENST00000636907 MUSKO15146 869 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 MMP2P08253 660 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 TPH1P17752 444 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 MSH2P43246 934 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 NRIP1P48552 1158 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 NPY2RP49146 381 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 ZNF235Q14590 738 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 IHHQ14623 411 aa17.13■□□□□ 0.33
CLN3-252ENST00000636907 TERF2Q15554 542 aa17.13■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms