RNA–Protein interactions for RNA: ENST00000601341.5

VRK3-223, Transcript of vaccinia related kinase 3, human

APPRIS ALT2 TSL 2 BASIC

Gene VRK3, Length 1,777 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VRK3-223	ENST00000601341	FNBP1L	Q5T0N5	605 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	STXBP5	Q5T5C0	1151 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	HHAT	Q5VTY9	493 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	ANKRD22	Q5VYY1	191 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	TMC5	Q6UXY8	1006 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	TMEM184A	Q6ZMB5	413 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	CMTM8	Q8IZV2	173 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	EFHB	Q8N7U6	833 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	C12orf76	Q8N812	135 aa	Predicted RBP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	FAM71D	Q8N9W8	422 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	CCNY	Q8ND76	341 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	MCU	Q8NE86	351 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	DCAKD	Q8WVC6	231 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC44A1	Q8WWI5	657 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	INPP5D	Q92835	1189 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	KLHL29	Q96CT2	875 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	QKI	Q96PU8	341 aa	Known RBP eCLIP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	TMEM237	Q96Q45	408 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	RETREG1	Q9H6L5	497 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	YY1AP1	Q9H869	796 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	C10orf88	Q9H8K7	445 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	LMCD1	Q9NZU5	365 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	ARHGAP26	Q9UNA1	814 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	RPL26L1	Q9UNX3	145 aa	Known RBP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF510	Q9Y2H8	683 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	MRPS23	Q9Y3D9	190 aa	Known RBP	11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	CDH23	Q9H251	3354 aa		11.93	□□□□□ -0.5
VRK3-223	ENST00000601341	NRG2	O14511	850 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	KCNN4	O15554	427 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TMEM63A	O94886	807 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	EZR	P15311	586 aa	Known RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	KRT4	P19013	534 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	RBL1	P28749	1068 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	NTHL1	P78549	312 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	ZXDB	P98169	803 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	C5orf22	Q49AR2	442 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TCEAL5	Q5H9L2	206 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	RABGAP1L	Q5R372	815 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	HEATR6	Q6AI08	1181 aa	Known RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	HTR3D	Q70Z44	454 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	CYS1	Q717R9	158 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	LGI2	Q8N0V4	545 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	NPW	Q8N729	165 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	BANP	Q8N9N5	519 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	ADAMTS19	Q8TE59	1207 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	IGSF8	Q969P0	613 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	LRRC37B	Q96QE4	947 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	KLC2	Q9H0B6	622 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	PRDM12	Q9H4Q4	367 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	USP29	Q9HBJ7	922 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TMEM248	Q9NWD8	314 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	SH3BP1	Q9Y3L3	701 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TNRC18	O15417	2968 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TRAFD1	O14545	582 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	GREM1	O60565	184 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	WFS1	O76024	890 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TGDS	O95455	350 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	DHRS4L1	P0CG22	281 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	SSTR1	P30872	391 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC6A4	P31645	630 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	SLC18A2	Q05940	514 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	GALNT2	Q10471	571 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	AP1B1	Q10567	949 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	HYAL1	Q12794	435 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	PRKD1	Q15139	912 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	ZKSCAN8	Q15776	578 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	MSS51	Q4VC12	460 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	LGSN	Q5TDP6	509 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	FYB2	Q5VWT5	728 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	RFWD3	Q6PCD5	774 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341		Q6ZNB5	142 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TFAP2D	Q7Z6R9	452 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	LRRC49	Q8IUZ0	686 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	UMODL1-AS1	Q8N2C9	162 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	CCDC33	Q8N5R6	958 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	CFAP61	Q8NHU2	1237 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	ZNF75CP	Q92670	426 aa	Predicted RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	WBP2	Q969T9	261 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	RMDN2	Q96LZ7	410 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	LGMN	Q99538	433 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	WDR83	Q9BRX9	315 aa	Known RBP	11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TUBB6	Q9BUF5	446 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	LRMDA	Q9H2I8	198 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	NOD2	Q9HC29	1040 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	MLXIPL	Q9NP71	852 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	SAR1A	Q9NR31	198 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TDP1	Q9NUW8	608 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	MKS1	Q9NXB0	559 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	CFAP97	Q9P2B7	532 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	IKBKG	Q9Y6K9	419 aa		11.92	□□□□□ -0.5
VRK3-223	ENST00000601341	TMEM265	A0A087WTH1	108 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	LEFTY2	O00292	366 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	KLF11	O14901	512 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	MTSS1	O43312	755 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	SPAG7	O75391	227 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	CNTN5	O94779	1100 aa		11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	STK10	O94804	968 aa	Known RBP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	TROVE2	P10155	538 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
VRK3-223	ENST00000601341	GARS	P41250	739 aa	Known RBP	11.91	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms