RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 ZNF572Q7Z3I7 529 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 CIR1Q86X95 450 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 TP53INP2Q8IXH6 220 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 KIAA1958Q8N8K9 716 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 PRELID2Q8N945 189 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 NETO2Q8NC67 525 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 PIP4K2CQ8TBX8 421 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 CSGALNACT1Q8TDX6 532 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 ADAMTS14Q8WXS8 1223 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 TBC1D31Q96DN5 1066 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 TMA16Q96EY4 203 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 PRICKLE1Q96MT3 831 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 AP1M1Q9BXS5 423 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 C8orf33Q9H7E9 229 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 KIF9Q9HAQ2 790 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 OBP2AQ9NY56 170 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 SAE1Q9UBE0 346 aaPredicted RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 LSM7Q9UK45 103 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 SLC8A2Q9UPR5 921 aa9.68□□□□□ -0.86
TRIM28-208ENST00000597172 SPTBN1Q01082 2364 aaKnown RBP9.68□□□□□ -0.86
TRIM28-208ENST00000597172 F5H5T6 163 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 APOL1O14791 398 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 DAPK3O43293 454 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 PECAM1P16284 738 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-208ENST00000597172 RHOQP17081 205 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 CHKAP35790 457 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 PAFAH1B1P43034 410 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 SOX9P48436 509 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 DYNLT1P63172 113 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 GBE1Q04446 702 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 CYP4F3Q08477 520 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 CCINQ13939 588 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 HNRNPDQ14103 355 aaKnown RBP9.67□□□□□ -0.86
TRIM28-208ENST00000597172 FYB2Q5VWT5 728 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 AFMIDQ63HM1 303 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 RHBDF2Q6PJF5 856 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 TPGS1Q6ZTW0 290 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 CYP2U1Q7Z449 544 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 TMEM25Q86YD3 366 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 MFSD6LQ8IWD5 586 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 CAMKK1Q8N5S9 505 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 LRRN4CLQ8ND94 238 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 SPATA4Q8NEY3 305 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 BPIFB1Q8TDL5 484 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 OSCP1Q8WVF1 389 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 C1orf54Q8WWF1 131 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 RPRD1AQ96P16 312 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-208ENST00000597172 FAM118BQ9BPY3 351 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 DDX50Q9BQ39 737 aaKnown RBP9.67□□□□□ -0.86
TRIM28-208ENST00000597172 FAM83CQ9BQN1 747 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 ZYG11BQ9C0D3 744 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 PRORYQ9H606 182 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 NOL6Q9H6R4 1146 aaKnown RBP9.67□□□□□ -0.86
TRIM28-208ENST00000597172 PRDM16Q9HAZ2 1276 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 TMEM248Q9NWD8 314 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 STIM2Q9P246 746 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 TBC1D14Q9P2M4 693 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 CLEC4EQ9ULY5 219 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 WNT6Q9Y6F9 365 aa9.67□□□□□ -0.86
TRIM28-208ENST00000597172 USP9YO00507 2555 aaPredicted RBP9.67□□□□□ -0.86
TRIM28-208ENST00000597172 COL4A2P08572 1712 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 APOC4-APOC2K7ER74 178 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 KRIT1O00522 736 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 FGF10O15520 208 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 TBL1XO60907 577 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 APOC2P02655 101 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 ZFXP17010 805 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 TGM2P21980 687 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CDH4P55283 916 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 OTUD4Q01804 1114 aaKnown RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 FCHO2Q0JRZ9 810 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CCNG2Q16589 344 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CYP1B1Q16678 543 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 EML3Q32P44 896 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CCDC181Q5TID7 509 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 TRIM68Q6AZZ1 485 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 PKN3Q6P5Z2 889 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 TXNDC11Q6PKC3 985 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 TFAP2DQ7Z6R9 452 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 ARHGAP12Q8IWW6 846 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 HDDC3Q8N4P3 179 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 NPWQ8N729 165 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 RTL3Q8N8U3 475 aaKnown RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 PNPLA1Q8N8W4 532 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 FAM181AQ8N9Y4 354 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 OR52K2Q8NGK3 314 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 ACTL9Q8TC94 416 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 LRRN4Q8WUT4 740 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 DEPDC1BQ8WUY9 529 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 MAIP1Q8WWC4 291 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 ATG4AQ8WYN0 398 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 E2F7Q96AV8 911 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 HAUS1Q96CS2 278 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 OTUB2Q96DC9 234 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CELF6Q96J87 481 aaKnown RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 ZFYVE19Q96K21 471 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 NAP1L3Q99457 506 aaPredicted RBP9.66□□□□□ -0.86
TRIM28-208ENST00000597172 CARD6Q9BX69 1037 aa9.66□□□□□ -0.86
TRIM28-208ENST00000597172 NUSAP1Q9BXS6 441 aaKnown RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms