RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 REXO4Q9GZR2 422 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 INTS2Q9H0H0 1204 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 NUP62CLQ9H1M0 184 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 EHD1Q9H4M9 534 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 TMEM206Q9H813 350 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ARNT2Q9HBZ2 717 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PTPRHQ9HD43 1115 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 AKIP1Q9NQ31 210 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 DDX19AQ9NUU7 478 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 HYPKQ9NX55 129 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GIN1Q9NXP7 522 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ANKFY1Q9P2R3 1169 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 KCNN3Q9UGI6 736 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 VPS51Q9UID3 782 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PNMA8BQ9ULN7 279 aaPredicted RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 FZD1Q9UP38 647 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLC8A2Q9UPR5 921 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MAP3K2Q9Y2U5 619 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MAGED1Q9Y5V3 778 aaPredicted RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 SNX8Q9Y5X2 465 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ARHGEF5Q12774 1597 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 AFF2P51816 1311 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ADGBQ8N7X0 1667 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 USP47Q96K76 1375 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SETD1AO15047 1707 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 OVOS2A0A0G2JMS6 1433 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 OVOS2A0A0J9YW53 1432 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 OVOS2Q6IE36 1432 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MAGI2Q86UL8 1455 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MROH2BQ7Z745 1585 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 TMEM131LA2VDJ0 1609 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 VWA3AA6NCI4 1184 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 UNC119BA6NIH7 251 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 TRIM75PA6NK02 468 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 DRGXA6NNA5 263 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MIF4GDA9UHW6 222 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 CENPBD1B2RD01 187 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 DIRC3C9JPN6 131 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 E7EVH7 732 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 STX16-NPEPL1H3BU86 382 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 WNT10BO00744 389 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 TOR1BO14657 336 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 IFIT3O14879 490 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 KIAA0391O15091 583 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 PFDN6O15212 129 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ALOX15BO15296 676 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 RNMTO43148 476 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 TEX33O43247 280 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ZBTB43O43298 467 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 STX6O43752 255 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 LPXNO60711 386 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PFKFB2O60825 505 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 RAMP2O60895 175 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 TSC22D2O75157 780 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 GPC4O75487 556 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 NPPAP01160 153 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 HMGN1P05114 100 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 HLA-DOAP06340 250 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PDHA1P08559 390 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SNRPAP09012 282 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 PABPC4LP0CB38 370 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 ATF6P18850 670 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 C5AR1P21730 350 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PCSK1P29120 753 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PPP1R2P41236 205 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CD86P42081 329 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PRCPP42785 496 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SLC6A9P48067 706 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 RXRGP48443 463 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CDK7P50613 346 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 FXR1P51114 621 aaKnown RBP eCLIP3.35□□□□□ -1.87
VPS35-208ENST00000568612 CCR3P51677 355 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CACNA2D1P54289 1103 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MYL6P60660 151 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CYP4F2P78329 520 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ITIH4Q14624 930 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 KPNB1Q14974 876 aaKnown RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 PCBP2Q15366 365 aaKnown RBP eCLIP3.35□□□□□ -1.87
VPS35-208ENST00000568612 NPTX1Q15818 432 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 NFIL3Q16649 462 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PHKG1Q16816 387 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 UAP1L1Q3KQV9 507 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CFAP221Q4G0U5 840 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 LIN52Q52LA3 116 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ALFQ53S48 1182 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 ODF2Q5BJF6 829 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 HERC4Q5GLZ8 1057 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 PPP6R3Q5H9R7 873 aaPredicted RBP3.35□□□□□ -1.87
VPS35-208ENST00000568612 GRTP1Q5TC63 336 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MAP3K21Q5TCX8 1036 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 SWSAP1Q6NVH7 229 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 PPP1R2P3Q6NXS1 205 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 CEP85Q6P2H3 762 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 LRRC8BQ6P9F7 803 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 KLHL35Q6PF15 583 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 KDELC1Q6UW63 502 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 C4orf22Q6V702 233 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 LRRC55Q6ZSA7 311 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MFSD6Q6ZSS7 791 aa3.35□□□□□ -1.87
VPS35-208ENST00000568612 MARK2Q7KZI7 788 aaKnown RBP3.35□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms