RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-222ENST00000568034 LHX3Q9UBR4 397 aa18.33■□□□□ 0.52
COMMD4-222ENST00000568034 SHROOM3Q8TF72 1996 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 EDDM13A0A1B0GTR0 161 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 TJP3O95049 919 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 MSNP26038 577 aaKnown RBP18.32■□□□□ 0.52
COMMD4-222ENST00000568034 CXCR5P32302 372 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 NNMTP40261 264 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 CETN2P41208 172 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 CXCL12P48061 93 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 NR2C2P49116 596 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 COPAP53621 1224 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 GEMIN4P57678 1058 aaKnown RBP18.32■□□□□ 0.52
COMMD4-222ENST00000568034 OTUD4Q01804 1114 aaKnown RBP18.32■□□□□ 0.52
COMMD4-222ENST00000568034 NOMO1Q15155 1222 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 SEL1L2Q5TEA6 688 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 SDE2Q6IQ49 451 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 SLC13A5Q86YT5 568 aaPredicted RBP18.32■□□□□ 0.52
COMMD4-222ENST00000568034 C1orf210Q8IVY1 113 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 CASKIN2Q8WXE0 1202 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 MAML1Q92585 1016 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 FATE1Q969F0 183 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 ISG20Q96AZ6 181 aaKnown RBP18.32■□□□□ 0.52
COMMD4-222ENST00000568034 ZNF599Q96NL3 588 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 HHIPQ96QV1 700 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 TNKS2Q9H2K2 1166 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 SUN2Q9UH99 717 aa18.32■□□□□ 0.52
COMMD4-222ENST00000568034 TARSL2A2RTX5 802 aaKnown RBP18.31■□□□□ 0.52
COMMD4-222ENST00000568034 CCNCP24863 283 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 DGKEP52429 567 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 SLC10A7Q0GE19 358 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 PDK1Q15118 436 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 PRKD1Q15139 912 aaPredicted RBP18.31■□□□□ 0.52
COMMD4-222ENST00000568034 SIX1Q15475 284 aaPredicted RBP18.31■□□□□ 0.52
COMMD4-222ENST00000568034 TMCO4Q5TGY1 634 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 NYAP1Q6ZVC0 841 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 B4GALNT4Q76KP1 1039 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 TEX26Q8N6G2 289 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 PCDH20Q8N6Y1 951 aaKnown RBP18.31■□□□□ 0.52
COMMD4-222ENST00000568034 OR2A12Q8NGT7 310 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 ACTL9Q8TC94 416 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 P3H4Q92791 437 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 SNX12Q9UMY4 172 aa18.31■□□□□ 0.52
COMMD4-222ENST00000568034 R3HDM2Q9Y2K5 976 aaKnown RBP18.31■□□□□ 0.52
COMMD4-222ENST00000568034 TCRBV21S2A2A0A5A6 115 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 MUSKO15146 869 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 MATN3O15232 486 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 RGRP47804 291 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 ZNF33AQ06730 810 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 RFTN1Q14699 578 aaPredicted RBP18.3■□□□□ 0.52
COMMD4-222ENST00000568034 LBRQ14739 615 aaKnown RBP18.3■□□□□ 0.52
COMMD4-222ENST00000568034 STARD3Q14849 445 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 ACCSLQ4AC99 568 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 TSSK4Q6SA08 328 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 METTL3Q86U44 580 aaKnown RBP18.3■□□□□ 0.52
COMMD4-222ENST00000568034 RASSF3Q86WH2 238 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 CCDC13Q8IYE1 715 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 STK40Q8N2I9 435 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 RASGEF1CQ8N431 466 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 OR2T3Q8NH03 318 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 COG1Q8WTW3 980 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 QKIQ96PU8 341 aaKnown RBP eCLIP18.3■□□□□ 0.52
COMMD4-222ENST00000568034 OSBPL9Q96SU4 736 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 FAM129BQ96TA1 746 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 FAM118BQ9BPY3 351 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 TM6SF2Q9BZW4 377 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 MKRN2Q9H000 416 aaKnown RBP18.3■□□□□ 0.52
COMMD4-222ENST00000568034 SLC6A17Q9H1V8 727 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 SLC8A2Q9UPR5 921 aa18.3■□□□□ 0.52
COMMD4-222ENST00000568034 RNF103O00237 685 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 PPP1R12AO14974 1030 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 LAMTOR5O43504 91 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 SYNCRIPO60506 623 aaKnown RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 GSRP00390 522 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 GABRG2P18507 467 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 NDUFV2P19404 249 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 ETF1P62495 437 aaKnown RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 DMWDQ09019 674 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 ZBTB17Q13105 803 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 ELAVL3Q14576 367 aaKnown RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 FAM182AQ5T1J6 154 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 PAPD7Q5XG87 772 aaKnown RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 TIGD7Q6NT04 549 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 DPY19L3Q6ZPD9 716 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 PLPP6Q8IY26 295 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 PGBD5Q8N414 524 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 TSEN2Q8NCE0 465 aaKnown RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 CHST14Q8NCH0 376 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 CCNYQ8ND76 341 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 MDGA1Q8NFP4 955 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 TSTD1Q8NFU3 115 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 PBKQ96KB5 322 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 PSKH2Q96QS6 385 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 NAPGQ99747 312 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 BRD8Q9H0E9 1235 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 RSPH9Q9H1X1 276 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 POLMQ9NP87 494 aaPredicted RBP18.29■□□□□ 0.52
COMMD4-222ENST00000568034 RAPGEFL1Q9UHV5 662 aa18.29■□□□□ 0.52
COMMD4-222ENST00000568034 GALR2O43603 387 aaPredicted RBP18.28■□□□□ 0.52
COMMD4-222ENST00000568034 CEP104O60308 925 aa18.28■□□□□ 0.52
COMMD4-222ENST00000568034 GJB3O75712 270 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms