RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ARTNQ5T4W7 220 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 NAPEPLDQ6IQ20 393 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 DSG4Q86SJ6 1040 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 MFSD2AQ8NA29 543 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 CHST14Q8NCH0 376 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 SNIP1Q8TAD8 396 aaKnown RBP19.44■□□□□ 0.7
VPS35-202ENST00000561713 GRIN3AQ8TCU5 1115 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 BAP1Q92560 729 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 NT5C3BQ969T7 300 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 TNKS2Q9H2K2 1166 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 NLRC4Q9NPP4 1024 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 FAM207AQ9NSI2 230 aaPredicted RBP19.44■□□□□ 0.7
VPS35-202ENST00000561713 RRN3Q9NYV6 651 aa19.44■□□□□ 0.7
VPS35-202ENST00000561713 C1QTNF3-AMACRE9PGA6 284 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 SRGAP2O75044 1071 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 SDC3O75056 442 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 ENDOD1O94919 500 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 LSM8O95777 96 aaKnown RBP19.43■□□□□ 0.7
VPS35-202ENST00000561713 SCNN1AP37088 669 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 POLR2FP61218 127 aaKnown RBP19.43■□□□□ 0.7
VPS35-202ENST00000561713 ATP11AP98196 1134 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 INSM1Q01101 510 aaPredicted RBP19.43■□□□□ 0.7
VPS35-202ENST00000561713 ILKQ13418 452 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 CDKAL1Q5VV42 579 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 C22orf39Q6P5X5 142 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 OXR1Q8N573 874 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 DCAF4L2Q8NA75 395 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 ATP11CQ8NB49 1132 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 KLK6Q92876 244 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 FGF11Q92914 225 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 FAM131CQ96AQ9 280 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 ARRDC3Q96B67 414 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 PGAP3Q96FM1 320 aaPredicted RBP19.43■□□□□ 0.7
VPS35-202ENST00000561713 C11orf70Q9BRQ4 267 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 STK33Q9BYT3 514 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 CAAP1Q9H8G2 361 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 TMEM59LQ9UK28 342 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 PPM1HQ9ULR3 514 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 TPX2Q9ULW0 747 aaKnown RBP19.43■□□□□ 0.7
VPS35-202ENST00000561713 HS3ST2Q9Y278 367 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 ACTL7AQ9Y615 435 aa19.43■□□□□ 0.7
VPS35-202ENST00000561713 KPNA3O00505 521 aaPredicted RBP19.42■□□□□ 0.7
VPS35-202ENST00000561713 PRLRP16471 622 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 CHRNB2P17787 502 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 TAS2R38P59533 333 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 FMO1Q01740 532 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 CCDC173Q0VFZ6 552 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 C15orf59Q2T9L4 293 aaPredicted RBP19.42■□□□□ 0.7
VPS35-202ENST00000561713 PROX2Q3B8N5 592 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 PIP5KL1Q5T9C9 394 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 PRPF39Q86UA1 669 aaKnown RBP19.42■□□□□ 0.7
VPS35-202ENST00000561713 DRC7Q8IY82 874 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 SLC30A5Q8TAD4 765 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 GPT2Q8TD30 523 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 RFFLQ8WZ73 363 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 C2orf49Q9BVC5 232 aaPredicted RBP19.42■□□□□ 0.7
VPS35-202ENST00000561713 FZD3Q9NPG1 666 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 CLCA2Q9UQC9 943 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 ZNF462Q96JM2 2506 aa19.42■□□□□ 0.7
VPS35-202ENST00000561713 TRIM38O00635 465 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 MCF2LO15068 1137 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 ALOX15BO15296 676 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 ACP1P24666 158 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 OR1E1P30953 314 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 VASPP50552 380 aaPredicted RBP19.41■□□□□ 0.7
VPS35-202ENST00000561713 KRT83P78385 493 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 TLE3Q04726 772 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 MTA1Q13330 715 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 FAM46CQ5VWP2 391 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 LRRC31Q6UY01 552 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 BNIPLQ7Z465 357 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 ZNF843Q8N446 348 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 DCBLD1Q8N8Z6 715 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 MSANTD4Q8NCY6 345 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 OR2A12Q8NGT7 310 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 JOSD2Q8TAC2 188 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 PPP1R9BQ96SB3 815 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 SPON2Q9BUD6 331 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 ZNF212Q9UDV6 495 aa19.41■□□□□ 0.7
VPS35-202ENST00000561713 IGLV3-10A0A075B6K4 115 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 DRGXA6NNA5 263 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 SLC7A4O43246 635 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 SIGLEC6O43699 453 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 F9P00740 461 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 PLA2G2AP14555 144 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 CHRNA3P32297 505 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 JAM2P57087 298 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 CDR2Q01850 454 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 STAT4Q14765 748 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 KDM7AQ6ZMT4 941 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 GPR155Q7Z3F1 870 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 SETD3Q86TU7 594 aaPredicted RBP19.4■□□□□ 0.7
VPS35-202ENST00000561713 IQCHQ86VS3 1027 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 CACTIN-AS1Q8N1I8 211 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 SLC25A45Q8N413 288 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 LSM14AQ8ND56 463 aaKnown RBP19.4■□□□□ 0.7
VPS35-202ENST00000561713 ENOX1Q8TC92 643 aaKnown RBP19.4■□□□□ 0.7
VPS35-202ENST00000561713 COL26A1Q96A83 441 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 MAGEB5Q9BZ81 275 aa19.4■□□□□ 0.7
VPS35-202ENST00000561713 KDM4CQ9H3R0 1056 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms