RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 SMAD6O43541 496 aaKnown RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 WASP42768 502 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 AP1B1Q10567 949 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 GAS6Q14393 721 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 HNRNPA1L2Q32P51 320 aaKnown RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 TMCO4Q5TGY1 634 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 PKN3Q6P5Z2 889 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 SYT13Q7L8C5 426 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 ADAT2Q7Z6V5 191 aaKnown RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 ZC3H18Q86VM9 953 aaKnown RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 CCDC13Q8IYE1 715 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 SPEM1Q8N4L4 309 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 FBXL6Q8N531 539 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 ACTRT1Q8TDG2 376 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 FRS2Q8WU20 508 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 TFB1MQ8WVM0 346 aaKnown RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 ISG20Q96AZ6 181 aaKnown RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 MS4A14Q96JA4 679 aa17.44■□□□□ 0.38
LIG1-204ENST00000542460 FRMD8P1Q9BZ68 369 aaPredicted RBP17.44■□□□□ 0.38
LIG1-204ENST00000542460 PGRMC1O00264 195 aaKnown RBP17.43■□□□□ 0.38
LIG1-204ENST00000542460 MCF2LO15068 1137 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 ZNF185O15231 689 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 ADAM23O75077 832 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 PEX11BO96011 259 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 EPHX1P07099 455 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 HLA-EP13747 358 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 PRKCHP24723 683 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 EIF3EP60228 445 aaKnown RBP17.43■□□□□ 0.38
LIG1-204ENST00000542460 HNRNPDQ14103 355 aaKnown RBP17.43■□□□□ 0.38
LIG1-204ENST00000542460 LBRQ14739 615 aaKnown RBP17.43■□□□□ 0.38
LIG1-204ENST00000542460 LRRN4Q8WUT4 740 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 FCF1Q9Y324 198 aaKnown RBP17.43■□□□□ 0.38
LIG1-204ENST00000542460 CHD5Q8TDI0 1954 aa17.43■□□□□ 0.38
LIG1-204ENST00000542460 EDDM13A0A1B0GTR0 161 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 TARSL2A2RTX5 802 aaKnown RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 H7C0C1 242 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 SYNCRIPO60506 623 aaKnown RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 TMCC1O94876 653 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 RBP3P10745 1247 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 CCNB1P14635 433 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 HOXB2P14652 356 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 ATP5OP48047 213 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 RENBPP51606 427 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 SLC10A7Q0GE19 358 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 MTAPQ13126 283 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 STARD3Q14849 445 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 PRKD1Q15139 912 aaPredicted RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 CYTH1Q15438 398 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 MARC1Q5VT66 337 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 C22orf39Q6P5X5 142 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 MAMSTRQ6ZN01 415 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 BBS5Q8N3I7 341 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 PCDH20Q8N6Y1 951 aaKnown RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 ZNF366Q8N895 744 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 MAML1Q92585 1016 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 PTPRN2Q92932 1015 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 FAM118BQ9BPY3 351 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 SEPT3Q9UH03 358 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 R3HDM2Q9Y2K5 976 aaKnown RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 MTSS1O43312 755 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 ZNF821O75541 412 aaPredicted RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 SIX1Q15475 284 aaPredicted RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 CRY1Q16526 586 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 SLC45A4Q5BKX6 768 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 CDKL3Q8IVW4 592 aaPredicted RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 PLPP6Q8IY26 295 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 TEX26Q8N6G2 289 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 CCDC114Q96M63 670 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 QKIQ96PU8 341 aaKnown RBP eCLIP17.42■□□□□ 0.38
LIG1-204ENST00000542460 PSKH2Q96QS6 385 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 FERMT1Q9BQL6 677 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 CINPQ9BW66 212 aaPredicted RBP17.42■□□□□ 0.38
LIG1-204ENST00000542460 HOMER3Q9NSC5 361 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 RNF14Q9UBS8 474 aa17.42■□□□□ 0.38
LIG1-204ENST00000542460 NUP205Q92621 2012 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 A0A1W2PQF6 199 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 KCNK1O00180 336 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 ZNF189O75820 626 aaPredicted RBP17.41■□□□□ 0.38
LIG1-204ENST00000542460 MMP13P45452 471 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 RECQLP46063 649 aaPredicted RBP17.41■□□□□ 0.38
LIG1-204ENST00000542460 RHOAP61586 193 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 IFI35P80217 286 aaPredicted RBP17.41■□□□□ 0.38
LIG1-204ENST00000542460 CAMK2GQ13555 558 aaPredicted RBP17.41■□□□□ 0.38
LIG1-204ENST00000542460 ZNF235Q14590 738 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 CCNG2Q16589 344 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 CARD16Q5EG05 197 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 C9orf64Q5T6V5 341 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 HEATR6Q6AI08 1181 aaKnown RBP17.41■□□□□ 0.38
LIG1-204ENST00000542460 DARS2Q6PI48 645 aaKnown RBP17.41■□□□□ 0.38
LIG1-204ENST00000542460 Q6ZVU0 165 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 B4GALNT4Q76KP1 1039 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 CREG2Q8IUH2 290 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 TMEM105Q8N8V8 129 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 SLC35B2Q8TB61 432 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 C1orf54Q8WWF1 131 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 HTR3CQ8WXA8 447 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 FAM122AQ96E09 287 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 TNKS2Q9H2K2 1166 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 MTG2Q9H4K7 406 aa17.41■□□□□ 0.38
LIG1-204ENST00000542460 PRSS16Q9NQE7 514 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms