RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 TBC1D10CQ8IV04 446 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 COLGALT2Q8IYK4 626 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 LRRC43Q8N309 656 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 C1orf162Q8NEQ5 155 aaPredicted RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 RDM1Q8NG50 284 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 OR2I1PQ8NGU4 316 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 ITFG1Q8TB96 612 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 CCDC12Q8WUD4 166 aaPredicted RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 HDAC7Q8WUI4 952 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 SLC9A6Q92581 669 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 ZC3H10Q96K80 434 aaKnown RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 FAM167AQ96KS9 214 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 PNKPQ96T60 521 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 JPH2Q9BR39 696 aaPredicted RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 SDF4Q9BRK5 362 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 VN1R3Q9BXE9 311 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 C22orf23Q9BZE7 217 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 UBA5Q9GZZ9 404 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 NT5C3AQ9H0P0 336 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 GSTO2Q9H4Y5 243 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 PSTPIP2Q9H939 334 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 RGS18Q9NS28 235 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TBC1D22BQ9NU19 505 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 DACT1Q9NYF0 836 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 FAM30AQ9NZY2 134 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 DKK4Q9UBT3 224 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TCEAL9Q9UHQ7 104 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 MAD2L2Q9UI95 211 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TRHDEQ9UKU6 1024 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 TRPV2Q9Y5S1 764 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 ZFP37Q9Y6Q3 630 aaPredicted RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 UTP20O75691 2785 aaKnown RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 COL5A1P20908 1838 aaPredicted RBP4.32□□□□□ -1.72
USP54-217ENST00000498213 PCNX1Q96RV3 2341 aa4.32□□□□□ -1.72
USP54-217ENST00000498213 NF1P21359 2839 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 LCTP09848 1927 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 MGAQ8IWI9 3026 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 NEDD4P46934 1319 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 CCDC196A0A1B0GTZ2 297 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 CCDC194A0A1B0GVG4 234 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 ESYT2A0FGR8 921 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 MEIS2O14770 477 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 ZC3H11AO75152 810 aaKnown RBP eCLIP4.31□□□□□ -1.72
USP54-217ENST00000498213 RHOBTB1O94844 696 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 PAPSS2O95340 614 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 AMY1AP04745 511 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 ELANEP08246 267 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 HMGB1P09429 215 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 GOLGA8HP0CJ92 632 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 EGR2P11161 476 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 MTHFD1P11586 935 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 MYCLP12524 364 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 KCNA2P16389 499 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 CDK11BP21127 795 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 MARK3P27448 753 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 RAB27AP51159 221 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 CRYBB1P53674 252 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 AK2P54819 239 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 NUCB1Q02818 461 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 HNRNPA0Q13151 305 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 KRTAP21-3Q3LHN1 58 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 B3GNTL1Q67FW5 361 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 PPP4R3AQ6IN85 833 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 CHD1LQ86WJ1 897 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 PALB2Q86YC2 1186 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 HDDC3Q8N4P3 179 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 AOPEPQ8N6M6 819 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 ING5Q8WYH8 240 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 LINC00476Q8WZB0 136 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 JADE3Q92613 823 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 PIGKQ92643 395 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 RAB24Q969Q5 203 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 MARS2Q96GW9 593 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 FAXDC2Q96IV6 333 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 FAM227BQ96M60 508 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 Q96MF0 132 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 MED15Q96RN5 788 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 GTPBP2Q9BX10 602 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 PACSIN1Q9BY11 444 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 INO80BQ9C086 356 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 FZD8Q9H461 694 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 BRD9Q9H8M2 597 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 RBM28Q9NW13 759 aaKnown RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 SYBUQ9NX95 663 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 DKK2Q9UBU2 259 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 SLC9A2Q9UBY0 812 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 HEMK1Q9Y5R4 338 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 UBIAD1Q9Y5Z9 338 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 EPN1Q9Y6I3 576 aaPredicted RBP4.31□□□□□ -1.72
USP54-217ENST00000498213 PIAS3Q9Y6X2 628 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 ITPR2Q14571 2701 aa4.31□□□□□ -1.72
USP54-217ENST00000498213 TLN1Q9Y490 2541 aaKnown RBP4.3□□□□□ -1.72
USP54-217ENST00000498213 TRGV11A0A075B6L2 103 aa4.3□□□□□ -1.72
USP54-217ENST00000498213 A0A0U1RQF3 1178 aa4.3□□□□□ -1.72
USP54-217ENST00000498213 IFIT3O14879 490 aaKnown RBP4.3□□□□□ -1.72
USP54-217ENST00000498213 TEX28O15482 410 aa4.3□□□□□ -1.72
USP54-217ENST00000498213 RRP8O43159 456 aaKnown RBP4.3□□□□□ -1.72
USP54-217ENST00000498213 EPB41L2O43491 1005 aaKnown RBP4.3□□□□□ -1.72
USP54-217ENST00000498213 TLX3O43711 291 aaPredicted RBP4.3□□□□□ -1.72
USP54-217ENST00000498213 SH3BP5O60239 455 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms