RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	PPP1R12A	O14974	1030 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	MATN3	O15232	486 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	NCAM2	O15394	837 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TIMM44	O43615	452 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	ATP9B	O43861	1147 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	URI1	O94763	535 aa	Predicted RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	SRPRA	P08240	638 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	ALAD	P13716	330 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	ATP5O	P48047	213 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	KCNJ1	P48048	391 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	WASHC5	Q12768	1159 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	XRCC4	Q13426	336 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	DLG2	Q15700	870 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	RETSAT	Q6NUM9	610 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	KIAA1211L	Q6NV74	962 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	C22orf39	Q6P5X5	142 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197		Q6ZVU0	165 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	PRUNE1	Q86TP1	453 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TEX26	Q8N6G2	289 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	CNTD1	Q8N815	330 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	GLIS1	Q8NBF1	620 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TTC13	Q8NBP0	860 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TXNDC5	Q8NBS9	432 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TSEN2	Q8NCE0	465 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	PTPRN2	Q92932	1015 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	CLDN23	Q96B33	292 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TMEM121	Q9BTD3	319 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	TM6SF2	Q9BZW4	377 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	USP29	Q9HBJ7	922 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	CD248	Q9HCU0	757 aa		13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	MRPS17	Q9Y2R5	130 aa	Known RBP	13.74	□□□□□ -0.21
PTPN7-218	ENST00000496197	EML5	Q05BV3	1969 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	MCF2L	O15068	1137 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	HLA-DQB2	P05538	268 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	CCNB1	P14635	433 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	PTPN3	P26045	913 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	VASP	P50552	380 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	MAX	P61244	160 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	MRPS21	P82921	87 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	IHH	Q14623	411 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	LBR	Q14739	615 aa	Known RBP	13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	CCNG2	Q16589	344 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	FBXO43	Q4G163	708 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	TMCO4	Q5TGY1	634 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	SERPINA13P	Q6UXR4	307 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	TMEM92	Q6UXU6	159 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	NUDT18	Q6ZVK8	323 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	LRRC49	Q8IUZ0	686 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	CHPF	Q8IZ52	775 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	UCMA	Q8WVF2	138 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	NKD2	Q969F2	451 aa	Predicted RBP	13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	EXOC4	Q96A65	974 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	IL12RB2	Q99665	862 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	GABRG3	Q99928	467 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	MFSD1	Q9H3U5	465 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	C11orf16	Q9NQ32	467 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	SEPT10	Q9P0V9	454 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	PLA2G4C	Q9UP65	541 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	SIT1	Q9Y3P8	196 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197	MRFAP1	Q9Y605	127 aa		13.73	□□□□□ -0.21
PTPN7-218	ENST00000496197		A0A1W2PQF6	199 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	BCLAF3	A2AJT9	711 aa	Known RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	FAM86C2P	A6NEL3	165 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	HACD1	B0YJ81	288 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	TNFRSF10A	O00220	468 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	KRIT1	O00522	736 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	SIN3B	O75182	1162 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	JCHAIN	P01591	159 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	TUBB4A	P04350	444 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	EPHX1	P07099	455 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	ETS1	P14921	441 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	NTSR1	P30989	418 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	GK	P32189	559 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	IFI35	P80217	286 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	BYSL	Q13895	437 aa	Known RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	LRRC32	Q14392	662 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	CYP1B1	Q16678	543 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	ACCSL	Q4AC99	568 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	INO80D	Q53TQ3	878 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	C9orf64	Q5T6V5	341 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	TIGD7	Q6NT04	549 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	DARS2	Q6PI48	645 aa	Known RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	BZW1	Q7L1Q6	419 aa	Known RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	C12orf50	Q8NA57	414 aa	Predicted RBP	13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	CHST14	Q8NCH0	376 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	OR6K2	Q8NGY2	324 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	KIF18A	Q8NI77	898 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	HTR3C	Q8WXA8	447 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	FATE1	Q969F0	183 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	ZNF599	Q96NL3	588 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	NELL2	Q99435	816 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	OSBPL6	Q9BZF3	934 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	NT5M	Q9NPB1	228 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	CDC23	Q9UJX2	597 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	TTC28	Q96AY4	2481 aa		13.72	□□□□□ -0.21
PTPN7-218	ENST00000496197	CXorf51A	A0A1B0GTR3	108 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	INSIG1	O15503	277 aa		13.71	□□□□□ -0.21
PTPN7-218	ENST00000496197	KCNN4	O15554	427 aa		13.71	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms