RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PPP1R16AQ96I34 528 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 ACE2Q9BYF1 805 aaPredicted RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 MAGEB5Q9BZ81 275 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 TNKS2Q9H2K2 1166 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 KDM4CQ9H3R0 1056 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 GAREM1Q9H706 876 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CATSPERBQ9H7T0 1116 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 NDFIP2Q9NV92 336 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 IL36AQ9UHA7 158 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 SLCO1B1Q9Y6L6 691 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 CNOT1A5YKK6 2376 aaKnown RBP15.41■□□□□ 0.06
USP39-217ENST00000491659 SPTBN2O15020 2390 aa15.41■□□□□ 0.06
USP39-217ENST00000491659 PLRG1O43660 514 aaKnown RBP15.4■□□□□ 0.06
USP39-217ENST00000491659 GJB3O75712 270 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 RNF8O76064 485 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 C21orf59P57076 290 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 ZBED6P86452 979 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 POLD3Q15054 466 aaPredicted RBP15.4■□□□□ 0.06
USP39-217ENST00000491659 HLA-BQ31612 363 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 AGBL4Q5VU57 503 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 PIP4P1Q86T03 277 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 RTL3Q8N8U3 475 aaKnown RBP15.4■□□□□ 0.06
USP39-217ENST00000491659 TMIEQ8NEW7 156 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 GRIN3AQ8TCU5 1115 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 CPLX3Q8WVH0 158 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 ARHGEF2Q92974 986 aaKnown RBP15.4■□□□□ 0.06
USP39-217ENST00000491659 SKA1Q96BD8 255 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 SLC6A18Q96N87 628 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.4■□□□□ 0.06
USP39-217ENST00000491659 MRPL47Q9HD33 250 aaKnown RBP15.4■□□□□ 0.06
USP39-217ENST00000491659 MYO1AQ9UBC5 1043 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 AP4E1Q9UPM8 1137 aa15.4■□□□□ 0.06
USP39-217ENST00000491659 LUC7L2Q9Y383 392 aaKnown RBP15.4■□□□□ 0.06
USP39-217ENST00000491659 ZSCAN5CA6NGD5 496 aaPredicted RBP15.39■□□□□ 0.05
USP39-217ENST00000491659 FGF10O15520 208 aaPredicted RBP15.39■□□□□ 0.05
USP39-217ENST00000491659 SERPING1P05155 500 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 CTSLP07711 333 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 ZNF883P0CG24 379 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 CD59P13987 128 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 HTR7P34969 479 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 DNA2P51530 1060 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 TPI1P60174 286 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 PPP2CBP62714 309 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 PPP2CAP67775 309 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 BNC1Q01954 994 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 HNRNPDQ14103 355 aaKnown RBP15.39■□□□□ 0.05
USP39-217ENST00000491659 KIF19Q2TAC6 998 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 SLC45A4Q5BKX6 768 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 LAYNQ6UX15 382 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 DPY19L3Q6ZPD9 716 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 PRPF39Q86UA1 669 aaKnown RBP15.39■□□□□ 0.05
USP39-217ENST00000491659 DNAAF5Q86Y56 855 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 FNIP1Q8TF40 1166 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 ORAI3Q9BRQ5 295 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 PREBQ9HCU5 417 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 AASDHPPTQ9NRN7 309 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 DONSONQ9NYP3 566 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 CAPN11Q9UMQ6 739 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 ANKRD6Q9Y2G4 727 aa15.39■□□□□ 0.05
USP39-217ENST00000491659 FCF1Q9Y324 198 aaKnown RBP15.39■□□□□ 0.05
USP39-217ENST00000491659 TMEM191CA6NGB0 347 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 EIF3CLB5ME19 914 aaKnown RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 CBFA2T2O43439 604 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 PRPSAP2O60256 369 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 PMLP29590 882 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 NUDT1P36639 197 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 CCNHP51946 323 aaPredicted RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 YBEYP58557 167 aaPredicted RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 CARD16Q5EG05 197 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 ARSIQ5FYB1 569 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 PIP5KL1Q5T9C9 394 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 HGSNATQ68CP4 663 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 TRIM69Q86WT6 500 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 NAXDQ8IW45 347 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 RYBPQ8N488 228 aaPredicted RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 CHST14Q8NCH0 376 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 ISG20Q96AZ6 181 aaKnown RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 ARRDC3Q96B67 414 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 SERAC1Q96JX3 654 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 EIF3CQ99613 913 aaKnown RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 NCAPGQ9BPX3 1015 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 HEPHQ9BQS7 1158 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 TM6SF2Q9BZW4 377 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 XPO4Q9C0E2 1151 aaKnown RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 ISCUQ9H1K1 167 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 TSPY26PQ9H489 355 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 IL21RQ9HBE5 538 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 TM7SF3Q9NS93 570 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 FNDC3AQ9Y2H6 1198 aaKnown RBP15.38■□□□□ 0.05
USP39-217ENST00000491659 PCDHB9Q9Y5E1 797 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.38■□□□□ 0.05
USP39-217ENST00000491659 SNX11Q9Y5W9 270 aa15.38■□□□□ 0.05
USP39-217ENST00000491659 WASH4PA8MWX3 477 aa15.37■□□□□ 0.05
USP39-217ENST00000491659 C10orf142B7Z368 130 aa15.37■□□□□ 0.05
USP39-217ENST00000491659 EEF2KO00418 725 aaKnown RBP15.37■□□□□ 0.05
USP39-217ENST00000491659 VILLO15195 856 aa15.37■□□□□ 0.05
USP39-217ENST00000491659 LATO43561 262 aa15.37■□□□□ 0.05
USP39-217ENST00000491659 KDELR3O43731 214 aa15.37■□□□□ 0.05
USP39-217ENST00000491659 ZNF821O75541 412 aaPredicted RBP15.37■□□□□ 0.05
USP39-217ENST00000491659 LEFTY1O75610 366 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms