RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 RNASEH2AO75792 299 aaKnown RBP15.05■□□□□ -0
USP4-212ENST00000486549 MTA2O94776 668 aa15.05■□□□□ -0
USP4-212ENST00000486549 IPO7O95373 1038 aaKnown RBP15.05■□□□□ -0
USP4-212ENST00000486549 CD160O95971 181 aa15.05■□□□□ -0
USP4-212ENST00000486549 ADH1BP00325 375 aa15.05■□□□□ -0
USP4-212ENST00000486549 FECHP22830 423 aa15.05■□□□□ -0
USP4-212ENST00000486549 AMPD1P23109 780 aa15.05■□□□□ -0
USP4-212ENST00000486549 ACSL1P33121 698 aa15.05■□□□□ -0
USP4-212ENST00000486549 RECQLP46063 649 aaPredicted RBP15.05■□□□□ -0
USP4-212ENST00000486549 HCAR3P49019 387 aa15.05■□□□□ -0
USP4-212ENST00000486549 ZNF135P52742 658 aaPredicted RBP15.05■□□□□ -0
USP4-212ENST00000486549 NDST2P52849 883 aa15.05■□□□□ -0
USP4-212ENST00000486549 GEMIN4P57678 1058 aaKnown RBP15.05■□□□□ -0
USP4-212ENST00000486549 SLC20A2Q08357 652 aa15.05■□□□□ -0
USP4-212ENST00000486549 DPYSQ14117 519 aa15.05■□□□□ -0
USP4-212ENST00000486549 AASDHQ4L235 1098 aaPredicted RBP15.05■□□□□ -0
USP4-212ENST00000486549 SPDYCQ5MJ68 293 aa15.05■□□□□ -0
USP4-212ENST00000486549 RAD9BQ6WBX8 426 aa15.05■□□□□ -0
USP4-212ENST00000486549 POLNQ7Z5Q5 900 aa15.05■□□□□ -0
USP4-212ENST00000486549 SLC41A1Q8IVJ1 513 aa15.05■□□□□ -0
USP4-212ENST00000486549 RYBPQ8N488 228 aaPredicted RBP15.05■□□□□ -0
USP4-212ENST00000486549 NPWQ8N729 165 aa15.05■□□□□ -0
USP4-212ENST00000486549 OR2A12Q8NGT7 310 aa15.05■□□□□ -0
USP4-212ENST00000486549 PIGKQ92643 395 aa15.05■□□□□ -0
USP4-212ENST00000486549 CSPG4P5Q96PW8 444 aa15.05■□□□□ -0
USP4-212ENST00000486549 OMDQ99983 421 aa15.05■□□□□ -0
USP4-212ENST00000486549 TM6SF2Q9BZW4 377 aa15.05■□□□□ -0
USP4-212ENST00000486549 SLC39A8Q9C0K1 460 aa15.05■□□□□ -0
USP4-212ENST00000486549 LRRC19Q9H756 370 aa15.05■□□□□ -0
USP4-212ENST00000486549 SERGEFQ9UGK8 458 aa15.05■□□□□ -0
USP4-212ENST00000486549 SARDHQ9UL12 918 aa15.05■□□□□ -0
USP4-212ENST00000486549 SCML1Q9UN30 329 aa15.05■□□□□ -0
USP4-212ENST00000486549 FARP1Q9Y4F1 1045 aaPredicted RBP15.05■□□□□ -0
USP4-212ENST00000486549 GON4LQ3T8J9 2241 aa15.04■□□□□ -0
USP4-212ENST00000486549 BCLAF3A2AJT9 711 aaKnown RBP15.04■□□□□ -0
USP4-212ENST00000486549 ARHGAP42A6NI28 874 aa15.04■□□□□ -0
USP4-212ENST00000486549 MEI4A8MW99 385 aa15.04■□□□□ -0
USP4-212ENST00000486549 C1QTNF3-AMACRE9PGA6 284 aa15.04■□□□□ -0
USP4-212ENST00000486549 PLK4O00444 970 aa15.04■□□□□ -0
USP4-212ENST00000486549 SLC30A4O14863 429 aa15.04■□□□□ -0
USP4-212ENST00000486549 MCF2LO15068 1137 aa15.04■□□□□ -0
USP4-212ENST00000486549 ALOX15BO15296 676 aa15.04■□□□□ -0
USP4-212ENST00000486549 IGLV3-19P01714 112 aa15.04■□□□□ -0
USP4-212ENST00000486549 CD48P09326 243 aa15.04■□□□□ -0
USP4-212ENST00000486549 TNNT1P13805 278 aa15.04■□□□□ -0
USP4-212ENST00000486549 C5AR1P21730 350 aa15.04■□□□□ -0
USP4-212ENST00000486549 ITPKAP23677 461 aa15.04■□□□□ -0
USP4-212ENST00000486549 CHRNA3P32297 505 aa15.04■□□□□ -0
USP4-212ENST00000486549 ARHGAP25P42331 645 aa15.04■□□□□ -0
USP4-212ENST00000486549 PAPOLAP51003 745 aaKnown RBP15.04■□□□□ -0
USP4-212ENST00000486549 METAP1P53582 386 aa15.04■□□□□ -0
USP4-212ENST00000486549 LIMK1P53667 647 aa15.04■□□□□ -0
USP4-212ENST00000486549 ZNF33AQ06730 810 aa15.04■□□□□ -0
USP4-212ENST00000486549 MMRN1Q13201 1228 aa15.04■□□□□ -0
USP4-212ENST00000486549 SERINC3Q13530 473 aa15.04■□□□□ -0
USP4-212ENST00000486549 DPY19L3Q6ZPD9 716 aa15.04■□□□□ -0
USP4-212ENST00000486549 HDDC3Q8N4P3 179 aa15.04■□□□□ -0
USP4-212ENST00000486549 AADATQ8N5Z0 425 aa15.04■□□□□ -0
USP4-212ENST00000486549 PCDH20Q8N6Y1 951 aaKnown RBP15.04■□□□□ -0
USP4-212ENST00000486549 KCTD6Q8NC69 237 aa15.04■□□□□ -0
USP4-212ENST00000486549 CHST14Q8NCH0 376 aa15.04■□□□□ -0
USP4-212ENST00000486549 ACRBPQ8NEB7 543 aa15.04■□□□□ -0
USP4-212ENST00000486549 PIP4K2CQ8TBX8 421 aa15.04■□□□□ -0
USP4-212ENST00000486549 GRIN3AQ8TCU5 1115 aa15.04■□□□□ -0
USP4-212ENST00000486549 CALN1Q9BXU9 219 aa15.04■□□□□ -0
USP4-212ENST00000486549 CEP44Q9C0F1 390 aa15.04■□□□□ -0
USP4-212ENST00000486549 BTBD1Q9H0C5 482 aa15.04■□□□□ -0
USP4-212ENST00000486549 ETNK2Q9NVF9 386 aa15.04■□□□□ -0
USP4-212ENST00000486549 HYOU1Q9Y4L1 999 aa15.04■□□□□ -0
USP4-212ENST00000486549 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.03■□□□□ -0
USP4-212ENST00000486549 ZSCAN5CA6NGD5 496 aaPredicted RBP15.03■□□□□ -0
USP4-212ENST00000486549 FAM47DPA6NHR8 397 aa15.03■□□□□ -0
USP4-212ENST00000486549 J3KR12 359 aa15.03■□□□□ -0
USP4-212ENST00000486549 ZNF821O75541 412 aaPredicted RBP15.03■□□□□ -0
USP4-212ENST00000486549 TMCC1O94876 653 aa15.03■□□□□ -0
USP4-212ENST00000486549 SEMA4FO95754 770 aa15.03■□□□□ -0
USP4-212ENST00000486549 CTSLP07711 333 aa15.03■□□□□ -0
USP4-212ENST00000486549 KRT7P08729 469 aa15.03■□□□□ -0
USP4-212ENST00000486549 SFSWAPQ12872 951 aaKnown RBP15.03■□□□□ -0
USP4-212ENST00000486549 DPYSL3Q14195 570 aa15.03■□□□□ -0
USP4-212ENST00000486549 SF3A2Q15428 464 aaKnown RBP15.03■□□□□ -0
USP4-212ENST00000486549 CARD16Q5EG05 197 aa15.03■□□□□ -0
USP4-212ENST00000486549 PLA2G2CQ5R387 149 aa15.03■□□□□ -0
USP4-212ENST00000486549 FAM46CQ5VWP2 391 aa15.03■□□□□ -0
USP4-212ENST00000486549 TCEAL6Q6IPX3 200 aa15.03■□□□□ -0
USP4-212ENST00000486549 TMCO3Q6UWJ1 677 aa15.03■□□□□ -0
USP4-212ENST00000486549 USP30Q70CQ3 517 aa15.03■□□□□ -0
USP4-212ENST00000486549 TMEM139Q8IV31 216 aa15.03■□□□□ -0
USP4-212ENST00000486549 ARHGAP12Q8IWW6 846 aa15.03■□□□□ -0
USP4-212ENST00000486549 TP53INP2Q8IXH6 220 aa15.03■□□□□ -0
USP4-212ENST00000486549 RGL4Q8IZJ4 473 aa15.03■□□□□ -0
USP4-212ENST00000486549 OR6K2Q8NGY2 324 aa15.03■□□□□ -0
USP4-212ENST00000486549 SNX19Q92543 992 aa15.03■□□□□ -0
USP4-212ENST00000486549 TSC1Q92574 1164 aa15.03■□□□□ -0
USP4-212ENST00000486549 TCEAL3Q969E4 200 aa15.03■□□□□ -0
USP4-212ENST00000486549 NEUROG2Q9H2A3 272 aa15.03■□□□□ -0
USP4-212ENST00000486549 C6orf106Q9H6K1 298 aaPredicted RBP15.03■□□□□ -0
USP4-212ENST00000486549 ZDHHC6Q9H6R6 413 aa15.03■□□□□ -0
USP4-212ENST00000486549 UBA2Q9UBT2 640 aaPredicted RBP15.03■□□□□ -0
USP4-212ENST00000486549 IL36AQ9UHA7 158 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms