RNA–Protein interactions for RNA: ENST00000472398.5

TTC3-214, Transcript of tetratricopeptide repeat domain 3, human

TSL 1 (best)

Gene TTC3, Length 2,305 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC3-214	ENST00000472398	MUC13	Q9H3R2	512 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	ABHD16B	Q9H3Z7	469 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	RIMS4	Q9H426	269 aa	Predicted RBP	3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	PHAX	Q9H814	394 aa	Known RBP	3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	METTL7A	Q9H8H3	244 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	PCDHB16	Q9NRJ7	776 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	KLC4	Q9NSK0	619 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	LMBRD1	Q9NUN5	540 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	TDP1	Q9NUW8	608 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	SH3BP4	Q9P0V3	963 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	MORF4L1	Q9UBU8	362 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	ASIC3	Q9UHC3	531 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	IL20RA	Q9UHF4	553 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	SOX13	Q9UN79	622 aa		3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	SRPRB	Q9Y5M8	271 aa	Known RBP	3.31	□□□□□ -1.88
TTC3-214	ENST00000472398	MAPK8IP3	Q9UPT6	1336 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398		A0A0U1RQV5	110 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398		A0A1W2PP55	124 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	PTPDC1	A2A3K4	754 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ZBTB42	B2RXF5	422 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	C22orf46	C9J442	243 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	AGRP	O00253	132 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398		O00370	1275 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	PODXL	O00592	558 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SCAMP2	O15127	329 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SLC16A3	O15427	465 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	AP5Z1	O43299	807 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	HTRA2	O43464	458 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	GUCY1B2	O75343	617 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	RHBDL1	O75783	438 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CLPX	O76031	633 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ATE1	O95260	518 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CCNDBP1	O95273	360 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	DDAH2	O95865	285 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	APOE	P02649	317 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SNRPA	P09012	282 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CLTA	P09496	248 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SLURP2	P0DP57	97 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	MYBL1	P10243	752 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	BMP4	P12644	408 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ETS1	P14921	441 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	HOXB8	P17481	243 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	AGA	P20933	346 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ADH6	P28332	368 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SHMT1	P34896	483 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ARL3	P36405	182 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	GATA4	P43694	442 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	LEPR	P48357	1165 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ALDH7A1	P49419	539 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	TSPAN5	P62079	268 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	NOMO3	P69849	1222 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ADAM17	P78536	824 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	KRT76	Q01546	638 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CYP4F3	Q08477	520 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	STIL	Q15468	1287 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	PARP6	Q2NL67	630 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	GAB4	Q2WGN9	574 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ADCK5	Q3MIX3	580 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	NOMO2	Q5JPE7	1267 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	RARS2	Q5T160	578 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	TDRD10	Q5VZ19	366 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ZNF385C	Q66K41	422 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	TIGD7	Q6NT04	549 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CASC4	Q6P4E1	433 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CES3	Q6UWW8	571 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	DTHD1	Q6ZMT9	781 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	MSANTD1	Q6ZTZ1	278 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	STXBP4	Q6ZWJ1	553 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	RHPN2	Q8IUC4	686 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SIRT2	Q8IXJ6	389 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	GPR65	Q8IYL9	337 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	KIAA2013	Q8IYS2	634 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	POGLUT1	Q8NBL1	392 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	C17orf47	Q8NEP4	570 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	IL31RA	Q8NI17	732 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	METTL6	Q8TCB7	284 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CCDC12	Q8WUD4	166 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CFHR4	Q92496	578 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CORO2A	Q92828	525 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	RFK	Q969G6	155 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ZNF653	Q96CK0	615 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CCDC51	Q96ER9	411 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	TMA16	Q96EY4	203 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	TSPAN17	Q96FV3	270 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ERO1A	Q96HE7	468 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CNTNAP3B	Q96NU0	1288 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	NECAB3	Q96P71	396 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	PNMA5	Q96PV4	448 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	GCNA	Q96QF7	691 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	ORAI2	Q96SN7	254 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	SEMA3C	Q99985	751 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	FAM118B	Q9BPY3	351 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	DBNDD2	Q9BQY9	259 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	HAUS8	Q9BT25	410 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CALN1	Q9BXU9	219 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	CNTNAP3	Q9BZ76	1288 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	BHLHE41	Q9C0J9	482 aa	Predicted RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	TMEM117	Q9H0C3	514 aa		3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	QRSL1	Q9H0R6	528 aa	Known RBP	3.3	□□□□□ -1.88
TTC3-214	ENST00000472398	PABPC3	Q9H361	631 aa	Known RBP	3.3	□□□□□ -1.88

Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms