RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 NSL1Q96IY1 281 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 MLPHQ9BV36 600 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 MTF2Q9Y483 593 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 SUPT7LO94864 414 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 CKMP06732 381 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 GLDCP23378 1020 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 LRPAP1P30533 357 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 CD68P34810 354 aaPredicted RBP13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 ADAM17P78536 824 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 RGS9BPQ6ZS82 235 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 DENND1AQ8TEH3 1009 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 UNC93B1Q9H1C4 597 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 CTPS1P17812 591 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 RPL9P32969 192 aaKnown RBP13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 MMEL1Q495T6 779 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 CNSTQ6PJW8 725 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 TRIM67Q6ZTA4 783 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 LPCAT1Q8NF37 534 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 ADAM28Q9UKQ2 775 aa13.95□□□□□ -0.18
CCDC88A-211ENST00000471947 LOC102724159A0A0B4J2E5 919 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 A0A1W2PQ45 241 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 A0A1W2PQY0 241 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 AXIN1O15169 862 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 IRAK2O43187 625 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 KRT36O76013 467 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 PIGNO95427 931 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 PWP2Q15269 919 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 TMEM169Q96HH4 297 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 TBATAQ96M53 351 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 WWP1Q9H0M0 922 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 PIF1Q9H611 641 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 XPR1Q9UBH6 696 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 SRRDQ9UH36 339 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 STARD13Q9Y3M8 1113 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 PRPF4O43172 522 aaKnown RBP eCLIP13.94□□□□□ -0.185e-22■□□□□ 10.4
CCDC88A-211ENST00000471947 USP1O94782 785 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 GJB5O95377 273 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 MBL2P11226 248 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 SLC11A1P49279 550 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 SERPINB9P50453 376 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 SEMA5AQ13591 1074 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 MAPRE1Q15691 268 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 ZNF789Q5FWF6 425 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 SMG9Q9H0W8 520 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 GPAMQ9HCL2 828 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 V9GYQ6 96 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 GPR39O43194 453 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 ABL2P42684 1182 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 PKNOX1P55347 436 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 BNIP1Q12981 228 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 MBTPS1Q14703 1052 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 NFE2Q16621 373 aaPredicted RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 ZRANB3Q5FWF4 1079 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 RBM20Q5T481 1227 aaKnown RBP13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 FBXL22Q6P050 247 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 LRRC8BQ6P9F7 803 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 RINLQ6ZS11 566 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 SCD5Q86SK9 330 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 ZNF781Q8N8C0 355 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 C10orf82Q8WW14 230 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 ALG9Q9H6U8 611 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 NMRAL1Q9HBL8 299 aa13.94□□□□□ -0.18
CCDC88A-211ENST00000471947 FAM95CA0A1B0GW59 222 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 H0Y626 953 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 GABRDO14764 452 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 GLRA3O75311 464 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 PROCP04070 461 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 GFAPP14136 432 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 PTPN7P35236 360 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 FUT10Q6P4F1 479 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 PIM3Q86V86 326 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 IFNEQ86WN2 208 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 DDIASQ8IXT1 998 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 TEX9Q8N6V9 391 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 IGSF8Q969P0 613 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 HIPK3Q9H422 1215 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 GLOD4Q9HC38 313 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 F5H5T6 163 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 KPNA6O60684 536 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 ADAMTS4O75173 837 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 GKP32189 559 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 RAB27AP51159 221 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 NEPROQ6NW34 567 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 MYLIPQ8WY64 445 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 RSRC1Q96IZ7 334 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 TEKT5Q96M29 485 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 CRISPLD1Q9H336 500 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 ATP13A1Q9HD20 1204 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 NUMBLQ9Y6R0 609 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 SHROOM3Q8TF72 1996 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 DCLK1O15075 740 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 SORBS2O94875 1100 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 AP2A1O95782 977 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 BPGMP07738 259 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 STMN1P16949 149 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 HARS2P49590 506 aaKnown RBP13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 RPS6KA2Q15349 733 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 RALGPS1Q5JS13 557 aa13.93□□□□□ -0.18
CCDC88A-211ENST00000471947 RASIP1Q5U651 963 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms