RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 FSCN3Q9NQT6 498 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 SARDHQ9UL12 918 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 KNL1Q8NG31 2342 aa15.51■□□□□ 0.07
LIMS3-201ENST00000437679 ASCC3Q8N3C0 2202 aaKnown RBP15.51■□□□□ 0.07
LIMS3-201ENST00000437679 ZSCAN5CA6NGD5 496 aaPredicted RBP15.5■□□□□ 0.07
LIMS3-201ENST00000437679 WASH4PA8MWX3 477 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 EEF2KO00418 725 aaKnown RBP15.5■□□□□ 0.07
LIMS3-201ENST00000437679 DAPK3O43293 454 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 KDELR3O43731 214 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 LRCH4O75427 683 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 CYP1A2P05177 515 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 CD27P26842 260 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 DRD3P35462 400 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 PCK1P35558 622 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 ADPRHP54922 357 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 YBEYP58557 167 aaPredicted RBP15.5■□□□□ 0.07
LIMS3-201ENST00000437679 CCDC15Q0P6D6 951 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 PIGHQ14442 188 aaPredicted RBP15.5■□□□□ 0.07
LIMS3-201ENST00000437679 POM121L1PQ3SYA9 428 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 PSTKQ8IV42 348 aaKnown RBP15.5■□□□□ 0.07
LIMS3-201ENST00000437679 TMIEQ8NEW7 156 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 PEBP4Q96S96 227 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 NUP85Q9BW27 656 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 ZDHHC5Q9C0B5 715 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 DYRK4Q9NR20 520 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 IL36AQ9UHA7 158 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 IP6K2Q9UHH9 426 aa15.5■□□□□ 0.07
LIMS3-201ENST00000437679 FCF1Q9Y324 198 aaKnown RBP15.5■□□□□ 0.07
LIMS3-201ENST00000437679 PCDH15Q96QU1 1955 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3DA0A087WVF3 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3IA0A087WXS9 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3EA0A087X179 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3KA0A087X1G2 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3FA6NER0 549 aaPredicted RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3LB9A6J9 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 RASA4BC9J798 803 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 KPNA3O00505 521 aaPredicted RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TM4SF5O14894 197 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 RASA4O43374 803 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 BUB1O43683 1085 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 CTSLP07711 333 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3HP0C7X1 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 KCNA4P22459 653 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 AFF3P51826 1226 aaKnown RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 ZNF135P52742 658 aaPredicted RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 METAP1P53582 386 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 CNTN1Q12860 1018 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TEAD4Q15561 434 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 SLC18A3Q16572 532 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 CA9Q16790 459 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 PARP15Q460N3 678 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 CARD16Q5EG05 197 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 ARSIQ5FYB1 569 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 PPP6R3Q5H9R7 873 aaPredicted RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3GQ6DHY5 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3CQ6IPX1 549 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 DPY19L3Q6ZPD9 716 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TBC1D3Q8IZP1 549 aaPredicted RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 UMODL1-AS1Q8N2C9 162 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 CHST14Q8NCH0 376 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 C1orf216Q8TAB5 229 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 GRIN3AQ8TCU5 1115 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 ISG20Q96AZ6 181 aaKnown RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 KCTD15Q96SI1 283 aaPredicted RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TRIM5Q9C035 493 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 KDM4CQ9H3R0 1056 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 NOL6Q9H6R4 1146 aaKnown RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 OSGEPQ9NPF4 335 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 ABHD10Q9NUJ1 306 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 ANAPC7Q9UJX3 599 aa15.49■□□□□ 0.07
LIMS3-201ENST00000437679 TPX2Q9ULW0 747 aaKnown RBP15.49■□□□□ 0.07
LIMS3-201ENST00000437679 SSU72P8A0A1W2PR75 194 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 MYO1FO00160 1098 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 PLK4O00444 970 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 AKR1B10O60218 316 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 OPHN1O60890 802 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 MFAP3LO75121 409 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 ZNF821O75541 412 aaPredicted RBP15.48■□□□□ 0.07
LIMS3-201ENST00000437679 IGHV4-34P06331 123 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 CCR5P51681 352 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 NDST2P52849 883 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 GRIK2Q13002 908 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 MAPK8IP2Q13387 824 aaPredicted RBP15.48■□□□□ 0.07
LIMS3-201ENST00000437679 BOLA3Q53S33 107 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 PPM1JQ5JR12 505 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 SARM1Q6SZW1 724 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 CNGA4Q8IV77 575 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 RYBPQ8N488 228 aaPredicted RBP15.48■□□□□ 0.07
LIMS3-201ENST00000437679 MINDY1Q8N5J2 469 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 CASKIN2Q8WXE0 1202 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 CTNNBL1Q8WYA6 563 aaPredicted RBP15.48■□□□□ 0.07
LIMS3-201ENST00000437679 FAM131CQ96AQ9 280 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 ARHGEF26Q96DR7 871 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 HMCESQ96FZ2 354 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 PPP1R16AQ96I34 528 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 HEPHQ9BQS7 1158 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 TM6SF2Q9BZW4 377 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 TM9SF3Q9HD45 589 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 NENFQ9UMX5 172 aa15.48■□□□□ 0.07
LIMS3-201ENST00000437679 ACTL7AQ9Y615 435 aa15.48■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms