RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 CCNCP24863 283 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 NNMTP40261 264 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 ZNF33AQ06730 810 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 MTAPQ13126 283 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 PRKD1Q15139 912 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 DLG2Q15700 870 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 HNRNPA1L2Q32P51 320 aaKnown RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 INO80DQ53TQ3 878 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 EOGTQ5NDL2 527 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 TMCO4Q5TGY1 634 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 C22orf39Q6P5X5 142 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 SYT10Q6XYQ8 523 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 METTL3Q86U44 580 aaKnown RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 SPEM1Q8N4L4 309 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 ZNF366Q8N895 744 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 TMEM105Q8N8V8 129 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 TTC13Q8NBP0 860 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 LRRN4Q8WUT4 740 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 QKIQ96PU8 341 aaKnown RBP eCLIP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 CEP44Q9C0F1 390 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 BRD8Q9H0E9 1235 aa17.31■□□□□ 0.36
COL7A1-202ENST00000422991 TTC7AQ9ULT0 858 aaPredicted RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 R3HDM2Q9Y2K5 976 aaKnown RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 FCF1Q9Y324 198 aaKnown RBP17.31■□□□□ 0.36
COL7A1-202ENST00000422991 ZNF821O75541 412 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 HOXB2P14652 356 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 VAV1P15498 845 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 PRLRP16471 622 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 CASQ1P31415 396 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 XRCC4Q13426 336 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 RFTN1Q14699 578 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 SIX1Q15475 284 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 SDE2Q6IQ49 451 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 TIGD7Q6NT04 549 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 SYT13Q7L8C5 426 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 ADAT2Q7Z6V5 191 aaKnown RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 CCDC13Q8IYE1 715 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 PCDH20Q8N6Y1 951 aaKnown RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 CCNYQ8ND76 341 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 MAML1Q92585 1016 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 ISG20Q96AZ6 181 aaKnown RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 FAM118BQ9BPY3 351 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 MTG2Q9H4K7 406 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 CD248Q9HCU0 757 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 POLR3BQ9NW08 1133 aaPredicted RBP17.3■□□□□ 0.36
COL7A1-202ENST00000422991 C2orf42Q9NWW7 574 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 SLC8A2Q9UPR5 921 aa17.3■□□□□ 0.36
COL7A1-202ENST00000422991 EDDM13A0A1B0GTR0 161 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 A0A1W2PQF6 199 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 HACD1B0YJ81 288 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 MCF2LO15068 1137 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 ZNF185O15231 689 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 MATN3O15232 486 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 EPHX1P07099 455 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 PTPN5P54829 565 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 EIF3EP60228 445 aaKnown RBP17.29■□□□□ 0.36
COL7A1-202ENST00000422991 CAMK2GQ13555 558 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-202ENST00000422991 LBRQ14739 615 aaKnown RBP17.29■□□□□ 0.36
COL7A1-202ENST00000422991 STARD3Q14849 445 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 CYTH1Q15438 398 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 ACCSLQ4AC99 568 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 KIAA1211LQ6NV74 962 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 MAMSTRQ6ZN01 415 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 Q6ZVU0 165 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 ZC3H18Q86VM9 953 aaKnown RBP17.29■□□□□ 0.36
COL7A1-202ENST00000422991 PRSS33Q8NF86 280 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 TFB1MQ8WVM0 346 aaKnown RBP17.29■□□□□ 0.36
COL7A1-202ENST00000422991 MAIP1Q8WWC4 291 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 ZNF419Q96HQ0 510 aaPredicted RBP17.29■□□□□ 0.36
COL7A1-202ENST00000422991 MS4A14Q96JA4 679 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 LHX3Q9UBR4 397 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 SUN2Q9UH99 717 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 SAR1BQ9Y6B6 198 aa17.29■□□□□ 0.36
COL7A1-202ENST00000422991 TARSL2A2RTX5 802 aaKnown RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 KIF2AO00139 706 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 PGRMC1O00264 195 aaKnown RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 SIN3BO75182 1162 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 IFI35P80217 286 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 SLC10A7Q0GE19 358 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 AP1B1Q10567 949 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 HNRNPDQ14103 355 aaKnown RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 CRY1Q16526 586 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 LONRF2Q1L5Z9 754 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 SLC45A4Q5BKX6 768 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 C9orf64Q5T6V5 341 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 TMEM92Q6UXU6 159 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 B4GALNT4Q76KP1 1039 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 CDKL3Q8IVW4 592 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 TEX26Q8N6G2 289 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 SLC35B2Q8TB61 432 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 ACTRT1Q8TDG2 376 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 NSMCE1Q8WV22 266 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 ATG4AQ8WYN0 398 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 PTPRN2Q92932 1015 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 FRMD8P1Q9BZ68 369 aaPredicted RBP17.28■□□□□ 0.36
COL7A1-202ENST00000422991 TNKS2Q9H2K2 1166 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 PRSS16Q9NQE7 514 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 SEPT3Q9UH03 358 aa17.28■□□□□ 0.36
COL7A1-202ENST00000422991 H7C0C1 242 aa17.27■□□□□ 0.36
COL7A1-202ENST00000422991 KCNK1O00180 336 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms