RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 POLRMTO00411 1230 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 OR10H2O60403 315 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 CCNE2O96020 404 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 DCKP27707 260 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MILR1Q7Z6M3 343 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ZC3H7AQ8IWR0 971 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 EIF1ADQ8N9N8 165 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MCFD2Q8NI22 146 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ZNF607Q96SK3 696 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 CDRT15Q96T59 188 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 OAS3Q9Y6K5 1087 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 NPHP3-ACAD11A0A0J9YXS1 232 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 TYMPP19971 482 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 AMPD2Q01433 879 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MTA1Q13330 715 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 JAZF1Q86VZ6 243 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 SYT12Q8IV01 421 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 PFDN5Q99471 154 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 CYP17A1P05093 508 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 IL13P35225 146 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 E2F2Q14209 437 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 RNF31Q96EP0 1072 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 APOPT1Q96IL0 206 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ACE2Q9BYF1 805 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 NIF3L1Q9GZT8 377 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 GNEQ9Y223 722 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 CHRNA5P30532 468 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 KCNJ1P48048 391 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 AFF1P51825 1210 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 PTCHD4Q6ZW05 846 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 APOBEC3FQ8IUX4 373 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ZFP28Q8NHY6 868 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 SETD6Q8TBK2 473 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 NAT14Q8WUY8 206 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 NELL1Q92832 810 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 M0QYT0 321 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MAGEB2O15479 319 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ORC5O43913 435 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 GRIA3P42263 894 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ATXN1P54253 815 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 COPS4Q9BT78 406 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 TAS2R13Q9NYV9 303 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 MID1O15344 667 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 DBIP07108 87 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 GPR107Q5VW38 600 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 HMBOX1Q6NT76 420 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 SRBD1Q8N5C6 995 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 PMM1Q92871 262 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 CHP1Q99653 195 aa13.49□□□□□ -0.25
CCDC88A-204ENST00000413716 ARID1BQ8NFD5 2236 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 OR56A5P0C7T3 313 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 THEGLP0DJG4 465 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 CIR1Q86X95 450 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ANKFN1Q8N957 763 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 NT5MQ9NPB1 228 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 POLR2EP19388 210 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ADGRG2Q8IZP9 1017 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 KCTD4Q8WVF5 259 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 SLC39A8Q9C0K1 460 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 AASSQ9UDR5 926 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 FLT1P17948 1338 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 CYP27B1O15528 508 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 CYP2E1P05181 493 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 PPM1AP35813 382 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 USP41Q3LFD5 358 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 PAGE2Q7Z2X7 111 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 RASAL3Q86YV0 1011 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 FCRL4Q96PJ5 515 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 VPS45Q9NRW7 570 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 MAP2P11137 1827 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 OR10H3O60404 316 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 PSMG1O95456 288 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 NOS2P35228 1153 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 GRM4Q14833 912 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 CWF19L1Q69YN2 538 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 SCAF8Q9UPN6 1271 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ALG6Q9Y672 507 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 IFI30P13284 250 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 CYP2A13Q16696 494 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 RNASE12Q5GAN4 147 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ATF7IP2Q5U623 682 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 KCNMB4Q86W47 210 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 RGS17Q9UGC6 210 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 OR10H1Q9Y4A9 318 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 CYB5AP00167 134 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 NR4A1P22736 598 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 RPL5P46777 297 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 DPYSQ14117 519 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 SPANXN3Q5MJ09 141 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 C12orf56Q8IXR9 622 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 THRSPQ92748 146 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 PTCD3Q96EY7 689 aaKnown RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ZSWIM1Q9BR11 485 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 PCDH18Q9HCL0 1135 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 TIMM8BQ9Y5J9 83 aaPredicted RBP13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 ABHD14A-ACY1A0A1B0GW23 586 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 B8ZZF3 427 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 XKRYO14609 159 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 DNTTP04053 509 aa13.48□□□□□ -0.25
CCDC88A-204ENST00000413716 RLN2P04090 185 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms