RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 ADPRHL2Q9NX46 363 aa19.79■□□□□ 0.76
CCDC88B-202ENST00000356786 A0A087X1B8 175 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 MYL12BO14950 172 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 TGFB1I1O43294 461 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 IL12AP29459 219 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 MAGEA10P43363 369 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC15A2Q16348 729 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PAN2Q504Q3 1202 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 IL27RAQ6UWB1 636 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 VGLL2Q8N8G2 317 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 WDR55Q9H6Y2 383 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 EIF2S1P05198 315 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PGM5Q15124 567 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PPP1R15BQ5SWA1 713 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 MFSD4BQ5TF39 518 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 TFAP2DQ7Z6R9 452 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 SLC41A1Q8IVJ1 513 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 TMEM132CQ8N3T6 1108 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 TBL1YQ9BQ87 522 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 TRIM8Q9BZR9 551 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ENOPH1Q9UHY7 261 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PADI4Q9UM07 663 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 WASF2Q9Y6W5 498 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 NOL4O94818 638 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 MARSP56192 900 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ST8SIA6P61647 398 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 EFEMP1Q12805 493 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF484Q5JVG2 852 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF621Q6ZSS3 439 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PARP8Q8N3A8 854 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 LRRC57Q8N9N7 239 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF540Q8NDQ6 660 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 RTKNQ9BST9 563 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 DEFB129Q9H1M3 183 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 NOL11Q9H8H0 719 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PLLPQ9Y342 182 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 LTA4HP09960 611 aaKnown RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF37AP17032 561 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ARMCX6Q7L4S7 300 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 PHF13Q86YI8 300 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 UBA2Q9UBT2 640 aaPredicted RBP19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF180Q9UJW8 692 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 GMPPBQ9Y5P6 360 aa19.78■□□□□ 0.76
CCDC88B-202ENST00000356786 TSPAN8P19075 237 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 FEN1P39748 380 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 ANXA11P50995 505 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 ANGEL2Q5VTE6 544 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 CMC1Q7Z7K0 106 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 PALB2Q86YC2 1186 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 SCUBE2Q9NQ36 999 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 TIPRLO75663 272 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 IL6P05231 212 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 MYL12AP19105 171 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 ZNF143P52747 638 aaPredicted RBP19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 ZSWIM7Q19AV6 140 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 SAMD3Q8N6K7 520 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 LRRN4Q8WUT4 740 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 NPAS2Q99743 824 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 KATNAL1Q9BW62 490 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 KCNQ5Q9NR82 932 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 CDH22Q9UJ99 828 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 NR2E1Q9Y466 385 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 FADS3Q9Y5Q0 445 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 HNRNPLP14866 589 aaKnown RBP eCLIP19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 KLHL12Q53G59 568 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 FGD3Q5JSP0 725 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 C6orf52Q5T4I8 152 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 TDRD10Q5VZ19 366 aaKnown RBP19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 FAM45AQ8TCE6 357 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 ZFP42Q96MM3 310 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 PCDHB18PQ96TA0 734 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 ASB7Q9H672 318 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 SNX15Q9NRS6 342 aa19.77■□□□□ 0.76
CCDC88B-202ENST00000356786 GTF2BQ00403 316 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 BNIP2Q12982 314 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 NDUFA5Q16718 116 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 RNF19BQ6ZMZ0 732 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 DPP10Q8N608 796 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 PTGR2Q8N8N7 351 aaPredicted RBP19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 SNRNP25Q9BV90 132 aaKnown RBP19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 CDH19Q9H159 772 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 XPR1Q9UBH6 696 aa19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 LEF1Q9UJU2 399 aaPredicted RBP19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 RBMX2Q9Y388 322 aaKnown RBP19.77■□□□□ 0.75
CCDC88B-202ENST00000356786 ATP6V1G1O75348 118 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 PHKG1Q16816 387 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 LIPMQ5VYY2 423 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 C4orf32Q8N8J7 132 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 SLC44A1Q8WWI5 657 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 FBXO32Q969P5 355 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 TTYH3Q9C0H2 523 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 ZNF624Q9P2J8 865 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 FAM50BQ9Y247 325 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 ZBTB11O95625 1053 aaPredicted RBP19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 HGFP14210 728 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 PEX2P28328 305 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 CBX3Q13185 183 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 HIPK1Q86Z02 1210 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 SLC2A14Q8TDB8 520 aa19.76■□□□□ 0.75
CCDC88B-202ENST00000356786 UCMAQ8WVF2 138 aa19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms