RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 CUL1Q13616 776 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 PRKG1Q13976 671 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 EFTUD2Q15029 972 aaKnown RBP eCLIP2.4□□□□□ -2.022e-6■□□□□ 10.5
VPS54-202ENST00000354504 CNGA2Q16280 664 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 DPYSL2Q16555 572 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 C5orf22Q49AR2 442 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 CFAP221Q4G0U5 840 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 LACTB2Q53H82 288 aaPredicted RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 AGBL2Q5U5Z8 902 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 FAM219BQ5XKK7 198 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 IQSEC1Q6DN90 963 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 CYHR1Q6ZMK1 362 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 FASTKD5Q7L8L6 764 aaKnown RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 MAVSQ7Z434 540 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 NECAB2Q7Z6G3 386 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 SLCO6A1Q86UG4 719 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 PASD1Q8IV76 773 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 NPWQ8N729 165 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 RNF149Q8NC42 400 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 CHST14Q8NCH0 376 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 C1orf162Q8NEQ5 155 aaPredicted RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 GPRC5AQ8NFJ5 357 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 CCT6BQ92526 530 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 TAF4BQ92750 862 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 RAB24Q969Q5 203 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 SCYL1Q96KG9 808 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 LMLNQ96KR4 655 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 SPATA33Q96N06 139 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 PGLYRP2Q96PD5 576 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 TMEM209Q96SK2 561 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 SMOQ99835 787 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 PRMT1Q99873 361 aaKnown RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 B3GNT5Q9BYG0 378 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 ZNF518BQ9C0D4 1074 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 PABPC3Q9H361 631 aaKnown RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 CDC42EP4Q9H3Q1 356 aaKnown RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 SMARCAD1Q9H4L7 1026 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 PLEKHA4Q9H4M7 779 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 ASB7Q9H672 318 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 IFT22Q9H7X7 185 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 C10orf88Q9H8K7 445 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 CARS2Q9HA77 564 aaKnown RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 GEMIN8Q9NWZ8 242 aaKnown RBP2.4□□□□□ -2.02
VPS54-202ENST00000354504 CLDND1Q9NY35 253 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 FETUBQ9UGM5 382 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 FRMD4BQ9Y2L6 1034 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 NEUROG3Q9Y4Z2 214 aa2.4□□□□□ -2.02
VPS54-202ENST00000354504 SMIM28A0A1B0GU29 152 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 DBX1A6NMT0 343 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MIF4GDA9UHW6 222 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 C10orf142B7Z368 130 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 C22orf46C9J442 243 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 E5RJQ4 531 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SCDO00767 359 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 NRP1O14786 923 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MDM4O15151 490 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 IL1BP01584 269 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 LPLP06858 475 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MYBL1P10243 752 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 DLATP10515 647 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 TXNP10599 105 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 RALAP11233 206 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 RARGP13631 454 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CCND3P30281 292 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 ATICP31939 592 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ABCD1P33897 745 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PCK1P35558 622 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 NUMBP49757 651 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 GTF2A2P52657 109 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 EFNA5P52803 228 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 MFAP3P55082 362 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 WASHC5Q12768 1159 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 TRIM25Q14258 630 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 NOMO1Q15155 1222 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PTGISQ16647 500 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SETMARQ53H47 684 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 CLLU1OSQ5K130 101 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 GPR158Q5T848 1215 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CYP4A22Q5TCH4 519 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 TAF3Q5VWG9 929 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 NAA35Q5VZE5 725 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CCDC137Q6PK04 289 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 NPNTQ6UXI9 565 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SPOCD1Q6ZMY3 1216 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CDHR3Q6ZTQ4 885 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 CLEC20AQ6ZU45 233 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 BBS12Q6ZW61 710 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 OTUD6AQ7L8S5 288 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 YTHDF3Q7Z739 585 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 DAAM2Q86T65 1068 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 PRPF39Q86UA1 669 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 NLRP14Q86W24 1093 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ARHGAP12Q8IWW6 846 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 ZCCHC9Q8N567 271 aaKnown RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 CCDC185Q8N715 623 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 JPH3Q8WXH2 748 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 LIN37Q96GY3 246 aaPredicted RBP2.4□□□□□ -2.03
VPS54-202ENST00000354504 FUBP3Q96I24 572 aaKnown RBP eCLIP2.4□□□□□ -2.03
VPS54-202ENST00000354504 ATP6V1G3Q96LB4 118 aa2.4□□□□□ -2.03
VPS54-202ENST00000354504 SIGLEC10Q96LC7 697 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms