RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 HNRNPH3P31942 346 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 RPL7AP62424 266 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 AUHQ13825 339 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 E2F8A0AVK6 867 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 EPHB6O15197 1021 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ARFIP2P53365 341 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ZSCAN18Q8TBC5 510 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 ABHD8Q96I13 439 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 KLHL5Q96PQ7 755 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 TEX12Q9BXU0 123 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 RHOBTB2Q9BYZ6 727 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 NMRAL1Q9HBL8 299 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 FZD10Q9ULW2 581 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 C5orf58C9J3I9 102 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 MAN2B1O00754 1011 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ZBTB14O43829 449 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 CCDC22O60826 627 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 PPP1R37O75864 691 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 CTSAP10619 480 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ALPPL2P10696 532 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 PCNAP12004 261 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ALOX15P16050 662 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 PTPN7P35236 360 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 TTPAP49638 278 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 FAM126BQ8IXS8 530 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 C12orf50Q8NA57 414 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 ELMO1Q92556 727 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 LRRC39Q96DD0 335 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 MED8Q96G25 268 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 HAPLN3Q96S86 360 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 FANCEQ9HB96 536 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 PCDHGC5Q9Y5F6 944 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 A0A087X1B8 175 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 GOLGA8TH3BQL2 631 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ITGB6P18564 788 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 CDK18Q07002 472 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 FAM9CQ8IZT9 166 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 RTL3Q8N8U3 475 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 PCDHB18PQ96TA0 734 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 AGO3Q9H9G7 860 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 EIF3LQ9Y262 564 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 NCF1BA6NI72 391 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 NCF1CA8MVU1 366 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 ITGAVP06756 1048 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 KRT16P08779 473 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 NCF1P14598 390 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 LPOP22079 712 aaPredicted RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 CCNCP24863 283 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 AP1S1P61966 158 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 MMRN1Q13201 1228 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ANKRD20A4Q4UJ75 823 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 ANKS6Q68DC2 871 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 SMYD5Q6GMV2 418 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 VPS37AQ8NEZ2 397 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 LZICQ8WZA0 190 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 CD101Q93033 1021 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 OTUB2Q96DC9 234 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 SGSM3Q96HU1 749 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 PPP1R10Q96QC0 940 aaKnown RBP10.3□□□□□ -0.76
USP54-201ENST00000339859 WWP1Q9H0M0 922 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 AHSPQ9NZD4 102 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 MYH6P13533 1939 aa10.3□□□□□ -0.76
USP54-201ENST00000339859 A0A088AWK7 358 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 TRPC5OSA6NMA1 111 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 MEFVO15553 781 aaPredicted RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 ZNF10P21506 573 aaPredicted RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 ANXA11P50995 505 aaKnown RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 MTM1Q13496 603 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 KLHL35Q6PF15 583 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 RTL10Q7L3V2 364 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 SLC26A11Q86WA9 606 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 TRPV1Q8NER1 839 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ACOT9Q9Y305 439 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 LIASO43766 372 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 TPBGLP0DKB5 382 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 KRT4P19013 534 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 IL1RL1Q01638 556 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 RFTN1Q14699 578 aaPredicted RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 SGO1Q5FBB7 561 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 BBS12Q6ZW61 710 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 SYTL1Q8IYJ3 562 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 TFAP2BQ92481 460 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ASPSCR1Q9BZE9 553 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 CACNG4Q9UBN1 327 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 HAS3O00219 553 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 PPEF2O14830 753 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 PABPC1P11940 636 aaKnown RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 FMO4P31512 558 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ITPRIPL2Q3MIP1 535 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 LARP7Q4G0J3 582 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP54-201ENST00000339859 CACHD1Q5VU97 1274 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 MARK2Q7KZI7 788 aaKnown RBP10.29□□□□□ -0.76
USP54-201ENST00000339859 SCAMP5Q8TAC9 235 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 PRDM12Q9H4Q4 367 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ABCB8Q9NUT2 735 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 KCNA5P22460 613 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 HPCAP84074 193 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 CYP2A13Q16696 494 aa10.29□□□□□ -0.76
USP54-201ENST00000339859 ZNF470Q6ECI4 717 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms