RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 FATE1Q969F0 183 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 QKIQ96PU8 341 aaKnown RBP eCLIP22.58■■□□□ 1.2
SDC3-202ENST00000339394 AP1M1Q9BXS5 423 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 FRMD8P1Q9BZ68 369 aaPredicted RBP22.58■■□□□ 1.2
SDC3-202ENST00000339394 DNPEPQ9ULA0 475 aa22.58■■□□□ 1.2
SDC3-202ENST00000339394 PI15O43692 258 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 ADAM23O75077 832 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 TECTAO75443 2155 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 ZNF821O75541 412 aaPredicted RBP22.57■■□□□ 1.2
SDC3-202ENST00000339394 TMCC1O94876 653 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 KLF8O95600 359 aaPredicted RBP22.57■■□□□ 1.2
SDC3-202ENST00000339394 HLA-EP13747 358 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 PRKCHP24723 683 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 WASP42768 502 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 HNRNPDQ14103 355 aaKnown RBP22.57■■□□□ 1.2
SDC3-202ENST00000339394 RFTN1Q14699 578 aaPredicted RBP22.57■■□□□ 1.2
SDC3-202ENST00000339394 LBRQ14739 615 aaKnown RBP22.57■■□□□ 1.2
SDC3-202ENST00000339394 CYTH1Q15438 398 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 CCNG2Q16589 344 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 SLC45A4Q5BKX6 768 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 TMCO4Q5TGY1 634 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 METTL3Q86U44 580 aaKnown RBP22.57■■□□□ 1.2
SDC3-202ENST00000339394 PRELID2Q8N945 189 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 KIF18AQ8NI77 898 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 NSMCE1Q8WV22 266 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 MAML1Q92585 1016 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 NUP205Q92621 2012 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 RNF14Q9UBS8 474 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 CHD5Q8TDI0 1954 aa22.57■■□□□ 1.2
SDC3-202ENST00000339394 SGK1O00141 431 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 LIASO43766 372 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 URI1O94763 535 aaPredicted RBP22.56■■□□□ 1.2
SDC3-202ENST00000339394 CCNB1P14635 433 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 VAV1P15498 845 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 RPS9P46781 194 aaKnown RBP22.56■■□□□ 1.2
SDC3-202ENST00000339394 RENBPP51606 427 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 HNRNPA1L2Q32P51 320 aaKnown RBP22.56■■□□□ 1.2
SDC3-202ENST00000339394 HSF5Q4G112 596 aaPredicted RBP22.56■■□□□ 1.2
SDC3-202ENST00000339394 MARC1Q5VT66 337 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 SDE2Q6IQ49 451 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 DARS2Q6PI48 645 aaKnown RBP22.56■■□□□ 1.2
SDC3-202ENST00000339394 ZNF419Q96HQ0 510 aaPredicted RBP22.56■■□□□ 1.2
SDC3-202ENST00000339394 GABRG3Q99928 467 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 CEP44Q9C0F1 390 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 MTG2Q9H4K7 406 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 SLC8A2Q9UPR5 921 aa22.56■■□□□ 1.2
SDC3-202ENST00000339394 PDE2AO00408 941 aaPredicted RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 KRIT1O00522 736 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 EPHX1P07099 455 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 AOC1P19801 751 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 RBL1P28749 1068 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 SNX1Q13596 522 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 BYSLQ13895 437 aaKnown RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 FAM182AQ5T1J6 154 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 TEX26Q8N6G2 289 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 TSEN2Q8NCE0 465 aaKnown RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 HTR3CQ8WXA8 447 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 PBXIP1Q96AQ6 731 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 ISG20Q96AZ6 181 aaKnown RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 CHRDQ9H2X0 955 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 HOMER3Q9NSC5 361 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 SEPT10Q9P0V9 454 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 BCLAF3A2AJT9 711 aaKnown RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 CHURC1-FNTBB4DL54 471 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 JCHAINP01591 159 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 PAFAH1B1P43034 410 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 MMP13P45452 471 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 ZBTB17Q13105 803 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 OASLQ15646 514 aaKnown RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 HEATR6Q6AI08 1181 aaKnown RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 C22orf39Q6P5X5 142 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 CDKL3Q8IVW4 592 aaPredicted RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 PTPRN2Q92932 1015 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 NKD2Q969F2 451 aaPredicted RBP22.55■■□□□ 1.2
SDC3-202ENST00000339394 PSKH2Q96QS6 385 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 TMEM121Q9BTD3 319 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 TNKS2Q9H2K2 1166 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 RBM22Q9NW64 420 aaKnown RBP eCLIP22.55■■□□□ 1.2
SDC3-202ENST00000339394 DLGAP2Q9P1A6 1054 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 SEPT3Q9UH03 358 aa22.55■■□□□ 1.2
SDC3-202ENST00000339394 MTSS1O43312 755 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 ATG13O75143 517 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 CLCN5P51795 746 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 IFI35P80217 286 aaPredicted RBP22.54■■□□□ 1.2
SDC3-202ENST00000339394 DRICH1Q6PGQ1 229 aaPredicted RBP22.54■■□□□ 1.2
SDC3-202ENST00000339394 Q6ZVU0 165 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 CINPQ9BW66 212 aaPredicted RBP22.54■■□□□ 1.2
SDC3-202ENST00000339394 CEP41Q9BYV8 373 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 TM6SF2Q9BZW4 377 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 USP29Q9HBJ7 922 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 POLR3BQ9NW08 1133 aaPredicted RBP22.54■■□□□ 1.2
SDC3-202ENST00000339394 SUN2Q9UH99 717 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 MMP17Q9ULZ9 603 aa22.54■■□□□ 1.2
SDC3-202ENST00000339394 NYNRINQ9P2P1 1898 aaKnown RBP22.54■■□□□ 1.2
SDC3-202ENST00000339394 EDDM13A0A1B0GTR0 161 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 A0A1W2PQF6 199 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 MUSKO15146 869 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 HOXB2P14652 356 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 RHOAP61586 193 aa22.53■■□□□ 1.2
SDC3-202ENST00000339394 WASHC5Q12768 1159 aa22.53■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms