RNA–Protein interactions for RNA: ENST00000337526.10

RTN4-202, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,790 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-202ENST00000337526 ACVR2BQ13705 512 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MCOLN3Q8TDD5 553 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 CDK5RAP1Q96SZ6 601 aaKnown RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 TMEM109Q9BVC6 243 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 PCDH18Q9HCL0 1135 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 SPAG4Q9NPE6 437 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MARCH2Q9P0N8 246 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 CORO1CQ9ULV4 474 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 INVSQ9Y283 1065 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 YDJCA8MPS7 323 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 TULP2O00295 520 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 BPGMP07738 259 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 ABCB1P08183 1280 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 PIK3R1P27986 724 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 CTBP1Q13363 440 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 TRIP4Q15650 581 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 NPY5RQ15761 445 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 SLC39A12Q504Y0 691 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 ERAP2Q6P179 960 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 PGBD3Q8N328 593 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 SLC44A1Q8WWI5 657 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 LENG9Q96B70 501 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MTIF3Q9H2K0 278 aaKnown RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 GBA2Q9HCG7 927 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 CATSPERZQ9NTU4 200 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 OPTCQ9UBM4 332 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 CABYRO75952 493 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 URODP06132 367 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 GJB1P08034 283 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 FECHP22830 423 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MATKP42679 507 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 PSEN2P49810 448 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 RAB10P61026 200 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MTA1Q13330 715 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MAPK11Q15759 364 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 APTXQ7Z2E3 356 aaKnown RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 SYTL1Q8IYJ3 562 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 DNAJB14Q8TBM8 379 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 SPOCK2Q92563 424 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 NKD2Q969F2 451 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 PTCD3Q96EY7 689 aaKnown RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 CAMKK2Q96RR4 588 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 DGCR6LQ9BY27 220 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 RIBC2Q9H4K1 309 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 PNPOQ9NVS9 261 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.92□□□□□ -0.189e-9■■■■■ 42.6
RTN4-202ENST00000337526 ZNF112Q9UJU3 913 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 SMIM31A0A1B0GVY4 71 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 PRR23AA6NEV1 266 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 RGS14O43566 566 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 RFX3P48380 749 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 CLCN5P51795 746 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 NR1H2P55055 460 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 JAM2P57087 298 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 NOMO1Q15155 1222 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 SHROOM1Q2M3G4 852 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 IQSEC1Q6DN90 963 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 AAGABQ6PD74 315 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 ZNF621Q6ZSS3 439 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 TMEM159Q96B96 161 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 P2RY11Q96G91 374 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 NDNQ99608 321 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 MTG1Q9BT17 334 aaPredicted RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 VPS45Q9NRW7 570 aa13.92□□□□□ -0.18
RTN4-202ENST00000337526 GOLGA4Q13439 2230 aaKnown RBP13.92□□□□□ -0.18
RTN4-202ENST00000337526 FOXO6A8MYZ6 492 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 TRIM38O00635 465 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 MED26O95402 600 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 TSPAN8P19075 237 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 CD86P42081 329 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 SREBF2Q12772 1141 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 ARMC4Q5T2S8 1044 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 PPP1R26Q5T8A7 1209 aaPredicted RBP13.91□□□□□ -0.18
RTN4-202ENST00000337526 LIPMQ5VYY2 423 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 NETO2Q8NC67 525 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 TPD52L3Q96J77 140 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 CPXM1Q96SM3 734 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 MRPL57Q9BQC6 102 aaKnown RBP13.91□□□□□ -0.18
RTN4-202ENST00000337526 YIPF2Q9BWQ6 316 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 CEP44Q9C0F1 390 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 MTFR1LQ9H019 292 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 LHX5Q9H2C1 402 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 CAPN10Q9HC96 672 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 TRPC4Q9UBN4 977 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 PLLPQ9Y342 182 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 TNPO3Q9Y5L0 923 aaKnown RBP13.91□□□□□ -0.18
RTN4-202ENST00000337526 UBR1Q8IWV7 1749 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 SHPRHQ149N8 1683 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 PDZK1P1A8MUH7 402 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 KPNA4O00629 521 aaPredicted RBP13.91□□□□□ -0.18
RTN4-202ENST00000337526 ANXA6P08133 673 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 CYP2A7P20853 494 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 EPHB3P54753 998 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 SQLEQ14534 574 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 EML3Q32P44 896 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 C9orf131Q5VYM1 1079 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 PLPPR4Q7Z2D5 763 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 FBXO30Q8TB52 745 aa13.91□□□□□ -0.18
RTN4-202ENST00000337526 SMAD5Q99717 465 aaKnown RBP13.91□□□□□ -0.18
RTN4-202ENST00000337526 SENP6Q9GZR1 1112 aaPredicted RBP13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms