RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 FAM102AQ5T9C2 384 aaPredicted RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ADHFE1Q8IWW8 467 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SLC4A11Q8NBS3 891 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MYDGFQ969H8 173 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 CPNE1Q99829 537 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 NMRAL1Q9HBL8 299 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 ANKRD6Q9Y2G4 727 aa13.05□□□□□ -0.32
VAMP4-201ENST00000236192 MRPL11Q9Y3B7 192 aaKnown RBP13.05□□□□□ -0.32
VAMP4-201ENST00000236192 SYNJ2BP-COX16A0A087WUM0 186 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L15C9J2P7 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L13C9JLJ4 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L11C9JVI0 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L18D6R9N7 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L22D6RA61 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L17D6RBQ6 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L19D6RCP7 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L20D6RJB6 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 TIE1P35590 1138 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L24Q0WX57 530 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 RFX4Q33E94 735 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 MGAT5BQ3V5L5 792 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SLFN13Q68D06 897 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 USP17L6PQ6QN14 398 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 PID1Q7Z2X4 250 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 TOP1MTQ969P6 601 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 ASB9Q96DX5 294 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 CTRCQ99895 268 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 TINF2Q9BSI4 451 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 TSEN34Q9BSV6 310 aaKnown RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 DNAJC11Q9NVH1 559 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 POLR3BQ9NW08 1133 aaPredicted RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 COX16Q9P0S2 106 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 OGDHLQ9ULD0 1010 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 CDC14AQ9UNH5 594 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 PPME1Q9Y570 386 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 ADGRB3O60242 1522 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 HPCAL1P37235 193 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 CDK8P49336 464 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 PPP2R2BQ00005 443 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 ITKQ08881 620 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 VANGL1Q8TAA9 524 aaPredicted RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SERAC1Q96JX3 654 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SLC7A5P2Q9GIP4 190 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 RPF2Q9H7B2 306 aaKnown RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 INIPQ9NRY2 104 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 RIC8BQ9NVN3 520 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 DLC1Q96QB1 1528 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 XRCC1P18887 633 aaPredicted RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 ATP6V0D1P61421 351 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 NIPAL4Q0D2K0 466 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 FAM69CQ0P6D2 419 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SURF1Q15526 300 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 TBRG1Q3YBR2 411 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 FNBP1LQ5T0N5 605 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 AGAP7PQ5VUJ5 663 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 NEPROQ6NW34 567 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SMG8Q8ND04 991 aaKnown RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 HEXIM2Q96MH2 286 aaKnown RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 THUMPD3Q9BV44 507 aaKnown RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 ROGDIQ9GZN7 287 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 PIPSLA2A3N6 862 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SOAT2O75908 522 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 GLRBP48167 497 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 PSMC5P62195 406 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 PCSK7Q16549 785 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 C2CD6Q53TS8 623 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 FAM91A1Q658Y4 838 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 CCDC185Q8N715 623 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF285Q96NJ3 590 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 SLITRK1Q96PX8 696 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 C2orf49Q9BVC5 232 aaPredicted RBP13.04□□□□□ -0.32
VAMP4-201ENST00000236192 CAB39LQ9H9S4 337 aa13.04□□□□□ -0.32
VAMP4-201ENST00000236192 LOC102724428A0A0B4J2F2 783 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 TYROBPO43914 113 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 THRBP10828 461 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 TALDO1P37837 337 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 SIK1P57059 783 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 DLGAP5Q15398 846 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 USP43Q70EL4 1123 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 COLGALT2Q8IYK4 626 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 MIER2Q8N344 545 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 GLIS3Q8NEA6 775 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 SIAEQ9HAT2 523 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.03□□□□□ -0.32
VAMP4-201ENST00000236192 FADS2O95864 444 aaKnown RBP13.03□□□□□ -0.32
VAMP4-201ENST00000236192 CETPP11597 493 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 SLC7A2P52569 658 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 NDST2P52849 883 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 CD83Q01151 205 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 SNAPC2Q13487 334 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 SULT1C3Q6IMI6 304 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 ZNF767PQ75MW2 155 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 ATG16L2Q8NAA4 619 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 PCDH10Q9P2E7 1040 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 ZFYVE16Q7Z3T8 1539 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 IGSF9BQ9UPX0 1349 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 A0A096LPK6 155 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 TK2O00142 265 aa13.03□□□□□ -0.32
VAMP4-201ENST00000236192 BCAS2O75934 225 aaPredicted RBP13.03□□□□□ -0.32
VAMP4-201ENST00000236192 JAM2P57087 298 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms