RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 S100A6P06703 90 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 OPRL1P41146 370 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 VAC14Q08AM6 782 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 MESDQ14696 234 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 TAF5Q15542 800 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 BRDTQ58F21 947 aaPredicted RBP11.02□□□□□ -0.64
CLK3-226ENST00000569406 CCDC137Q6PK04 289 aaKnown RBP11.02□□□□□ -0.64
CLK3-226ENST00000569406 TMPRSS9Q7Z410 1059 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 LARGE2Q8N3Y3 721 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 FANK1Q8TC84 345 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 SLC44A1Q8WWI5 657 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 INTS12Q96CB8 462 aaKnown RBP11.02□□□□□ -0.64
CLK3-226ENST00000569406 COPS7BQ9H9Q2 264 aaPredicted RBP11.02□□□□□ -0.64
CLK3-226ENST00000569406 AGO4Q9HCK5 861 aaKnown RBP11.02□□□□□ -0.64
CLK3-226ENST00000569406 DNAJC28Q9NX36 388 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 IL20Q9NYY1 176 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 PFDN2Q9UHV9 154 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 ENOPH1Q9UHY7 261 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 SLC24A2Q9UI40 661 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 CDH7Q9ULB5 785 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 ZHX2Q9Y6X8 837 aa11.02□□□□□ -0.64
CLK3-226ENST00000569406 CLDN25C9JDP6 229 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 STMND1H3BQB6 276 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 PODXLO00592 558 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 STBD1O95210 358 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 CCNE2O96020 404 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 IFNA14P01570 189 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 HCAR3P49019 387 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 ARHGDIBP52566 201 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 ATXN3P54252 364 aaPredicted RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 DRG2P55039 364 aaKnown RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 CDR2LQ86X02 465 aaPredicted RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 SLC9A9Q8IVB4 645 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 GLYCTKQ8IVS8 523 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 OR8K3Q8NH51 312 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 DMRTB1Q96MA1 342 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SH2D3AQ9BRG2 576 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 ERVMER34-1Q9H9K5 563 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 FAM105AQ9NUU6 356 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 ZC3H7BQ9UGR2 993 aaKnown RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 RIPK3Q9Y572 518 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SIP14410 1827 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 NFKBIEO00221 500 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 CALUO43852 315 aaPredicted RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 KPNA6O60684 536 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 RGS20O76081 388 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 HSMCR30P0CW71 290 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 GAP43P17677 238 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 GSTM2P28161 218 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SSTR3P32745 418 aaPredicted RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 FMO5P49326 533 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SERPINH1P50454 418 aaKnown RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 SLC12A2P55011 1212 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 NPEPPSP55786 919 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 ZNF280AP59817 542 aaPredicted RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 OLR1P78380 273 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SLC13A2Q13183 592 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 TOMM20Q15388 145 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 USP41Q3LFD5 358 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 TKFCQ3LXA3 575 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 C4orf46Q504U0 113 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 DCAF12L1Q5VU92 463 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 PLEKHM3Q6ZWE6 761 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 HPS6Q86YV9 775 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 GALNT12Q8IXK2 581 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 LINC00518Q8N0U6 118 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 MYCT1Q8N699 235 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SYTL5Q8TDW5 730 aaPredicted RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 CHURC1Q8WUH1 139 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 JADE3Q92613 823 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SH3KBP1Q96B97 665 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 TOE1Q96GM8 510 aaKnown RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 REXO5Q96IC2 774 aaKnown RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 POP1Q99575 1024 aaKnown RBP11.02□□□□□ -0.65
CLK3-226ENST00000569406 RIT2Q99578 217 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 CDADC1Q9BWV3 514 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 SLC4A5Q9BY07 1137 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 ZNF341Q9BYN7 854 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 MYOZ2Q9NPC6 264 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 TAS2R14Q9NYV8 317 aa11.02□□□□□ -0.65
CLK3-226ENST00000569406 CROCCQ5TZA2 2017 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 EXOC1LA0A1B0GW35 172 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 NCAM2O15394 837 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PDPK1O15530 556 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 PIGNO95427 931 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 TRIM49P0CI25 452 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 TRIM49CP0CI26 452 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 ITIH2P19823 946 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 RARRES1P49788 294 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 NLRP11P59045 1033 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 PKN2Q16513 984 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 FAM47CQ5HY64 1035 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 DCUN1D2Q6PH85 259 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 FAM160B2Q86V87 743 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 ZNF786Q8N393 782 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 CCDC89Q8N998 374 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 REPS2Q8NFH8 660 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 SEC22CQ9BRL7 303 aa11.01□□□□□ -0.65
CLK3-226ENST00000569406 TDRD1Q9BXT4 1180 aaKnown RBP11.01□□□□□ -0.65
CLK3-226ENST00000569406 EPS8L2Q9H6S3 715 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms