RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 HRO43593 1189 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ACADMP11310 421 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 IL4RP24394 825 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 GJC1P36383 396 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 NAP1L1P55209 391 aaKnown RBP13.27□□□□□ -0.29
NEDD8-208ENST00000560427 MAP7D1Q3KQU3 841 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ACCSLQ4AC99 568 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ODF2Q5BJF6 829 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 SPDYCQ5MJ68 293 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 C22orf39Q6P5X5 142 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 KIAA1324Q6UXG2 1013 aaKnown RBP13.27□□□□□ -0.29
NEDD8-208ENST00000560427 SLC36A4Q6YBV0 504 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF662Q6ZS27 426 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF354CQ86Y25 554 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 CPNE8Q86YQ8 564 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 LRRC49Q8IUZ0 686 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 SYCE1Q8N0S2 351 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 RNF10Q8N5U6 811 aaKnown RBP13.27□□□□□ -0.29
NEDD8-208ENST00000560427 NPWQ8N729 165 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF366Q8N895 744 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 OR8D1Q8WZ84 308 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 NKD2Q969F2 451 aaPredicted RBP13.27□□□□□ -0.29
NEDD8-208ENST00000560427 DESI2Q9BSY9 194 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 FAM86C1Q9NVL1 165 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 SALL4Q9UJQ4 1053 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 RAB23Q9ULC3 237 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 TFR2Q9UP52 801 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ADGRG1Q9Y653 693 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 MYO18AQ92614 2054 aaKnown RBP13.27□□□□□ -0.29
NEDD8-208ENST00000560427 ATG2BQ96BY7 2078 aa13.27□□□□□ -0.29
NEDD8-208ENST00000560427 LRRD1A4D1F6 860 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 MCF2LO15068 1137 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 KRT86O43790 486 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 PRAMEF11O60813 436 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 ADH1BP00325 375 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 MT-CO1P00395 513 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 DNTTP04053 509 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 KRT1P04264 644 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 CCDC175P0C221 793 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 GLDCP23378 1020 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 KDELR1P24390 212 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 OXTRP30559 389 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 RECQLP46063 649 aaPredicted RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 RPS14P62263 151 aaKnown RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 CCZ1BP86790 482 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 CCZ1P86791 482 aaPredicted RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 SIM2Q14190 667 aaPredicted RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 GSE1Q14687 1217 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 RFTN1Q14699 578 aaPredicted RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 PAFAH1B3Q15102 231 aaKnown RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 ANKRD20A8PQ5CZ79 823 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 TMCO4Q5TGY1 634 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 FAM46CQ5VWP2 391 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 LINGO4Q6UY18 593 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 USP30Q70CQ3 517 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 CEP68Q76N32 757 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 KBTBD6Q86V97 674 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 ARHGAP12Q8IWW6 846 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 LOXL4Q96JB6 756 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 PDLIM2Q96JY6 352 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 ZC3H10Q96K80 434 aaKnown RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 ZNF599Q96NL3 588 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 SLC39A8Q9C0K1 460 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 PDFQ9HBH1 243 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 ITM2CQ9NQX7 267 aa13.26□□□□□ -0.29
NEDD8-208ENST00000560427 SMG5Q9UPR3 1016 aaKnown RBP13.26□□□□□ -0.29
NEDD8-208ENST00000560427 CCDC66A2RUB6 948 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 C1QTNF3-AMACRE9PGA6 284 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 K7ERQ8 282 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 SMAD6O43541 496 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 BUB1O43683 1085 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 RHOBTB1O94844 696 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 CD160O95971 181 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 GSRP00390 522 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 LMNAP02545 664 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 CD48P09326 243 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 ZFXP17010 805 aaPredicted RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 C5AR1P21730 350 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 AMPD1P23109 780 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 PLA2G5P39877 138 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 NUMBP49757 651 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 PAPOLAP51003 745 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 SNRPD1P62314 119 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 IL10RBQ08334 325 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 ELF2Q15723 593 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 ATP13A4Q4VNC1 1196 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 NCBP2-AS2Q69YL0 99 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 LAIR1Q6GTX8 287 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 Q6ZVU0 165 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 KATNAL2Q8IYT4 538 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 LRRC57Q8N9N7 239 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 OR2A12Q8NGT7 310 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 PCDH19Q8TAB3 1148 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 KIAA1524Q8TCG1 905 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 RAPGEF5Q92565 580 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 FAM122AQ96E09 287 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 RBM41Q96IZ5 413 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 CELF6Q96J87 481 aaKnown RBP13.25□□□□□ -0.29
NEDD8-208ENST00000560427 LRIG1Q96JA1 1093 aa13.25□□□□□ -0.29
NEDD8-208ENST00000560427 RNF157Q96PX1 679 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms