RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 EOMESO95936 686 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 ENO1P06733 434 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 GM2AP17900 193 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 CNTFP26441 200 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 ETFBP38117 255 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SKIV2L2P42285 1042 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 MLLT6P55198 1093 aaPredicted RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 MPP1Q00013 466 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 KDSRQ06136 332 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 TAF10Q12962 218 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MPP3Q13368 585 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 UBAP2LQ14157 1087 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 GRM3Q14832 879 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 TCTN1Q2MV58 587 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MAP3K21Q5TCX8 1036 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 FAM13CQ8NE31 585 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MYEOVQ96EZ4 313 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 PPP1R36Q96LQ0 422 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 FSD1LQ9BXM9 530 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 IL22Q9GZX6 179 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 NOL6Q9H6R4 1146 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 CATSPERBQ9H7T0 1116 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 GPBP1L1Q9HC44 474 aaPredicted RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 IPO11Q9UI26 975 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 HBS1LQ9Y450 684 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 VWA8A3KMH1 1905 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MYO16Q9Y6X6 1858 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MTSS1O43312 755 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 GLRA3O75311 464 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SNNO75324 88 aaPredicted RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 C2P06681 752 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RPL17P18621 184 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 CCNCP24863 283 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 GABRB3P28472 473 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SPRP35270 261 aaPredicted RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 SLC1A6P48664 564 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 TBX4P57082 545 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 DUSP4Q13115 394 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 GPNMBQ14956 572 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 CNGA3Q16281 694 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 GRTP1Q5TC63 336 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RASIP1Q5U651 963 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RAP1GAP2Q684P5 730 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 NAPEPLDQ6IQ20 393 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 KYAT3Q6YP21 454 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 RINLQ6ZS11 566 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 IGSF8Q969P0 613 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SCLYQ96I15 445 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 C7orf26Q96N11 449 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 TBL1YQ9BQ87 522 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SHCBP1LQ9BZQ2 653 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 GLOD4Q9HC38 313 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 NT5MQ9NPB1 228 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 DCDC2Q9UHG0 476 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RAD54BQ9Y620 910 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 C5orf42Q9H799 3197 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 ENPP3O14638 875 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 UPP2O95045 317 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 AHSGP02765 367 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 PROCP04070 461 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RPLP2P05387 115 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 CCR10P46092 362 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SLC10A7Q0GE19 358 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 USP4Q13107 963 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 NOGQ13253 232 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 EML3Q32P44 896 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 BRMS1LQ5PSV4 323 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RTP2Q5QGT7 225 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 C10orf120Q5SQS8 335 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MANEALQ5VSG8 457 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 ZNF280DQ6N043 979 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 PRSS55Q6UWB4 352 aaPredicted RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 NAPRTQ6XQN6 538 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 RNF19BQ6ZMZ0 732 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 LRRC8DQ7L1W4 858 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 CCDC91Q7Z6B0 441 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MON1AQ86VX9 555 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 DCP1BQ8IZD4 617 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 TTC8Q8TAM2 541 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 ZNF398Q8TD17 642 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 KCNV2Q8TDN2 545 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 SH3TC2Q8TF17 1288 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 FBXO32Q969P5 355 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 HMCESQ96FZ2 354 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 VPS39Q96JC1 886 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 VAT1Q99536 393 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 CADM1Q9BY67 442 aaKnown RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 THAP1Q9NVV9 213 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 MKS1Q9NXB0 559 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 COPG2Q9UBF2 871 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 NKX1-2Q9UD57 310 aaPredicted RBP10.8□□□□□ -0.68
CUX1-217ENST00000558836 ADAM28Q9UKQ2 775 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 ACTL7AQ9Y615 435 aa10.8□□□□□ -0.68
CUX1-217ENST00000558836 NYNRINQ9P2P1 1898 aaKnown RBP10.79□□□□□ -0.68
CUX1-217ENST00000558836 AURKAO14965 403 aa10.79□□□□□ -0.68
CUX1-217ENST00000558836 MATN3O15232 486 aa10.79□□□□□ -0.68
CUX1-217ENST00000558836 RPSAP08865 295 aaKnown RBP10.79□□□□□ -0.68
CUX1-217ENST00000558836 ESRRAP11474 423 aaPredicted RBP10.79□□□□□ -0.68
CUX1-217ENST00000558836 LIMK2P53671 638 aa10.79□□□□□ -0.68
CUX1-217ENST00000558836 IHHQ14623 411 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms