RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 LONRF2Q1L5Z9 754 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 FNDC3BQ53EP0 1204 aaKnown RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 SERPINA13PQ6UXR4 307 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 LEKR1Q6ZMV7 388 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 Q6ZS52 159 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 TRMT11Q7Z4G4 463 aaKnown RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ADAT2Q7Z6V5 191 aaKnown RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 CHPFQ8IZ52 775 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 RASGEF1CQ8N431 466 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 SH2D3CQ8N5H7 860 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ALLCQ8N6M5 410 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 IL17RCQ8NAC3 791 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ATP11CQ8NB49 1132 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 KDM1BQ8NB78 822 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 RPLP0P6Q8NHW5 317 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ACTL9Q8TC94 416 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 LRRN4Q8WUT4 740 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 HDAC11Q96DB2 347 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 MYO19Q96H55 970 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 MS4A14Q96JA4 679 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 TSGA13Q96PP4 275 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 LGMNQ99538 433 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 TMEM245Q9H330 911 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 CACNA2D2Q9NY47 1150 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 UBA2Q9UBT2 640 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 SLCO3A1Q9UIG8 710 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 TTC7AQ9ULT0 858 aaPredicted RBP12.49□□□□□ -0.41
SHMT2-209ENST00000553949 ACTL7AQ9Y615 435 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 SAR1BQ9Y6B6 198 aa12.49□□□□□ -0.41
SHMT2-209ENST00000553949 BDP1A6H8Y1 2624 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 K7ERQ8 282 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 KIF2AO00139 706 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF185O15231 689 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 ATP9BO43861 1147 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 KLF8O95600 359 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 DCNP07585 359 aaKnown RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 SRCP12931 536 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 AOC1P19801 751 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 PRKCHP24723 683 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 CCNCP24863 283 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 NTSR1P30989 418 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 NNMTP40261 264 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 IL12RB1P42701 662 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 RPS9P46781 194 aaKnown RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 CLCN5P51795 746 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 CLCN6P51797 869 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 PPIDQ08752 370 aaKnown RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 XRCC4Q13426 336 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 ENPP2Q13822 863 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 NOMO1Q15155 1222 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 HSF5Q4G112 596 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 INO80DQ53TQ3 878 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 SDE2Q6IQ49 451 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 TIGD7Q6NT04 549 aaPredicted RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 ZC3H18Q86VM9 953 aaKnown RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 CCDC13Q8IYE1 715 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 TTC13Q8NBP0 860 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 TXNDC5Q8NBS9 432 aaKnown RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 CCNYQ8ND76 341 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 ACTRT1Q8TDG2 376 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 PBXIP1Q96AQ6 731 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF599Q96NL3 588 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 GABRG3Q99928 467 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 FAM118BQ9BPY3 351 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 BRD8Q9H0E9 1235 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 CHRDQ9H2X0 955 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 R3HDM2Q9Y2K5 976 aaKnown RBP12.48□□□□□ -0.41
SHMT2-209ENST00000553949 STON1Q9Y6Q2 735 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 NCOR1O75376 2440 aa12.48□□□□□ -0.41
SHMT2-209ENST00000553949 TTC34A8MYJ7 566 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 CHURC1-FNTBB4DL54 471 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 WASH3PC4AMC7 463 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 MCF2LO15068 1137 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 SMAD6O43541 496 aaKnown RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 PI15O43692 258 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 ADAM23O75077 832 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 ATG13O75143 517 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 TMCC1O94876 653 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 PEX11BO96011 259 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 HLA-EP13747 358 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 WASP42768 502 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 EIF3EP60228 445 aaKnown RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 ZNF33AQ06730 810 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 AP1B1Q10567 949 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 GAS6Q14393 721 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 RFTN1Q14699 578 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 PRKD1Q15139 912 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 SIX1Q15475 284 aaPredicted RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 DLG2Q15700 870 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 ACCSLQ4AC99 568 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 EOGTQ5NDL2 527 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 TMCO4Q5TGY1 634 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 PKN3Q6P5Z2 889 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 B4GALNT4Q76KP1 1039 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 BMP8AQ7Z5Y6 402 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 METTL3Q86U44 580 aaKnown RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 NSMCE1Q8WV22 266 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 TFB1MQ8WVM0 346 aaKnown RBP12.47□□□□□ -0.41
SHMT2-209ENST00000553949 MAIP1Q8WWC4 291 aa12.47□□□□□ -0.41
SHMT2-209ENST00000553949 CASKIN2Q8WXE0 1202 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms