RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	LSM8	O95777	96 aa	Known RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	CAVIN2	O95810	425 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ERBB2	P04626	1255 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	PNMA6A	P0CW24	399 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SLC2A3	P11169	496 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	PABPC1	P11940	636 aa	Known RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	CYP11B1	P15538	503 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	KRT9	P35527	623 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	WAS	P42768	502 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZNF165	P49910	485 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SGSH	P51688	502 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ATXN1	P54253	815 aa	Known RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SNRPN	P63162	240 aa	Known RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	MYL5	Q02045	173 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	EIF4EBP2	Q13542	120 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	CDH18	Q13634	790 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZNF234	Q14588	700 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	DRAP1	Q14919	205 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	KRT31	Q15323	416 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SF3A2	Q15428	464 aa	Known RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	FUT11	Q495W5	492 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	PTPN20	Q4JDL3	420 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	AASDH	Q4L235	1098 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	DCAF6	Q58WW2	860 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	MS4A13	Q5J8X5	152 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	EFHC1	Q5JVL4	640 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	TMEM215	Q68D42	235 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	NADSYN1	Q6IA69	706 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	FDX2	Q6P4F2	183 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	RFWD3	Q6PCD5	774 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	FBXL19	Q6PCT2	694 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SASS6	Q6UVJ0	657 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	OLFML1	Q6UWY5	402 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SERPINA13P	Q6UXR4	307 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	LINC00114	Q6XXX2	140 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	C11orf57	Q6ZUT1	292 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	FAM183BP	Q6ZVS7	135 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ACAD11	Q709F0	780 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SLC26A9	Q7LBE3	791 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ADIPOR2	Q86V24	386 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	MFN1	Q8IWA4	741 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	WDTC1	Q8N5D0	677 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	GALNT11	Q8NCW6	608 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ANKRD20A12P	Q8NF67	263 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZNF397	Q8NF99	534 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	GRIN3A	Q8TCU5	1115 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	RLN3	Q8WXF3	142 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	TRIM11	Q96F44	468 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SEC16B	Q96JE7	1060 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	BTN2A3P	Q96KV6	586 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	LSM14B	Q9BX40	385 aa	Known RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	CIPC	Q9C0C6	399 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	SYNC	Q9H7C4	482 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	FAM204A	Q9H8W3	233 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	FBRS	Q9HAH7	460 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	ABCB8	Q9NUT2	735 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	TAB2	Q9NYJ8	693 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	TJP2	Q9UDY2	1190 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	MBD1	Q9UIS9	605 aa	Predicted RBP	7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	GGA2	Q9UJY4	613 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	INVS	Q9Y283	1065 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	RAD54B	Q9Y620	910 aa		7.94	□□□□□ -1.14
SNHG1-223	ENST00000545440	CABIN1	Q9Y6J0	2220 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	IGHV1OR15-9	A0A0B4J2B8	117 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	LOC100289279	A0A1B0GTE1	492 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	LNP1	A1A4G5	178 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	WASH3P	C4AMC7	463 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	SYNCRIP	O60506	623 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	TBL1X	O60907	577 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	LUC7L3	O95232	432 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	MOCS2	O96007	188 aa	Predicted RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	IGLV3-19	P01714	112 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	ATP5B	P06576	529 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	DLD	P09622	509 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	PRKCH	P24723	683 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	CCR1	P32246	355 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	DHPS	P49366	369 aa	Predicted RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	RPS24	P62847	133 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	CDK17	Q00537	523 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	SLC6A3	Q01959	620 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	RPL6	Q02878	288 aa	Known RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZNF252P-AS1	Q0IIN9	211 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	SEPT6	Q14141	434 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	CCDC6	Q16204	474 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	FKBP15	Q5T1M5	1219 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	LCE2C	Q5TA81	110 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	LYSMD4	Q5XG99	296 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	HGSNAT	Q68CP4	663 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	TCEAL6	Q6IPX3	200 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	CHST9	Q7L1S5	443 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	RABEPK	Q7Z6M1	372 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	ZNF677	Q86XU0	584 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	SYT12	Q8IV01	421 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	CCDC117	Q8IWD4	279 aa	Predicted RBP	7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	DEFB106A	Q8N104	65 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	FRMD1	Q8N878	549 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	ATP6V0D2	Q8N8Y2	350 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	TMEM35B	Q8NCS4	154 aa		7.93	□□□□□ -1.14
SNHG1-223	ENST00000545440	MSANTD4	Q8NCY6	345 aa		7.93	□□□□□ -1.14

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms