RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 ISG20Q96AZ6 181 aaKnown RBP14.57□□□□□ -0.08
NUP54-216ENST00000514901 FAF2Q96CS3 445 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 SIPA1Q96FS4 1042 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 HMCESQ96FZ2 354 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 CCDC114Q96M63 670 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 CALN1Q9BXU9 219 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 MKRN2Q9H000 416 aaKnown RBP14.57□□□□□ -0.08
NUP54-216ENST00000514901 KLC2Q9H0B6 622 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 SCML1Q9UN30 329 aa14.57□□□□□ -0.08
NUP54-216ENST00000514901 LRRD1A4D1F6 860 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 ALOX15BO15296 676 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 HRO43593 1189 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 SIN3BO75182 1162 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 RPP40O75818 363 aaKnown RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 PTMAP06454 111 aaKnown RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 CCDC175P0C221 793 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 ACADMP11310 421 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 GLDCP23378 1020 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 NUMBP49757 651 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 COPAP53621 1224 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 CCZ1BP86790 482 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 CCZ1P86791 482 aaPredicted RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 INO80DQ53TQ3 878 aaPredicted RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 ZNF776Q68DI1 518 aaPredicted RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 LINGO4Q6UY18 593 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 DSG4Q86SJ6 1040 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 PCDH20Q8N6Y1 951 aaKnown RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 RAPGEF5Q92565 580 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 PDLIM2Q96JY6 352 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 SPACA7Q96KW9 195 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 MAK16Q9BXY0 300 aaKnown RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 SLC39A8Q9C0K1 460 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 RSPH9Q9H1X1 276 aaPredicted RBP14.56□□□□□ -0.08
NUP54-216ENST00000514901 RAPGEFL1Q9UHV5 662 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 HYOU1Q9Y4L1 999 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 R4GN57 208 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 SDK1Q7Z5N4 2213 aa14.56□□□□□ -0.08
NUP54-216ENST00000514901 MACROD2A1Z1Q3 448 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 PROB1E7EW31 1015 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 MCF2LO15068 1137 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 CD48P09326 243 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 TNNT1P13805 278 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 ZFXP17010 805 aaPredicted RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 OXTRP30559 389 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 RECQLP46063 649 aaPredicted RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 PAPOLAP51003 745 aaKnown RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 RPS14P62263 151 aaKnown RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 MMRN1Q13201 1228 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 SIM2Q14190 667 aaPredicted RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 TMCO4Q5TGY1 634 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 KIAA1324Q6UXG2 1013 aaKnown RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 CEP68Q76N32 757 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 ARHGAP12Q8IWW6 846 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 KATNAL2Q8IYT4 538 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 RCOR2Q8IZ40 523 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 LRRC57Q8N9N7 239 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 PCDH19Q8TAB3 1148 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 OR8D1Q8WZ84 308 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 CELF6Q96J87 481 aaKnown RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 RNF157Q96PX1 679 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 TPSD1Q9BZJ3 242 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 EPC1Q9H2F5 836 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 ITM2CQ9NQX7 267 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 KLHL11Q9NVR0 708 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 RAB23Q9ULC3 237 aa14.55□□□□□ -0.08
NUP54-216ENST00000514901 MUC22E2RYF6 1773 aaPredicted RBP14.55□□□□□ -0.08
NUP54-216ENST00000514901 SPAG17Q6Q759 2223 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 VPS13AQ96RL7 3174 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 CCDC66A2RUB6 948 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 GRID2IPA4D2P6 1211 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 C3orf70A6NLC5 250 aaPredicted RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 K7ERQ8 282 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 DFFAO00273 331 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 SMAD6O43541 496 aaKnown RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 PRAMEF11O60813 436 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 ZRANB2O95218 330 aaKnown RBP eCLIP14.54□□□□□ -0.08
NUP54-216ENST00000514901 CD160O95971 181 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 DNTTP04053 509 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 KRT1P04264 644 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 P2RY2P41231 377 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 IL10RBQ08334 325 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 RFTN1Q14699 578 aaPredicted RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 PAFAH1B3Q15102 231 aaKnown RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 MAP7D1Q3KQU3 841 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 TTC31Q49AM3 519 aaPredicted RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 FAM46CQ5VWP2 391 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 C22orf39Q6P5X5 142 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 SLC36A4Q6YBV0 504 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 STK40Q8N2I9 435 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 NPWQ8N729 165 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 ZNF599Q96NL3 588 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 FAM129BQ96TA1 746 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 GOLPH3Q9H4A6 298 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 MTG2Q9H4K7 406 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 ETNK2Q9NVF9 386 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 FAM86C1Q9NVL1 165 aa14.54□□□□□ -0.08
NUP54-216ENST00000514901 USP36Q9P275 1121 aaKnown RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 UBA2Q9UBT2 640 aaPredicted RBP14.54□□□□□ -0.08
NUP54-216ENST00000514901 IPO11Q9UI26 975 aaKnown RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms