RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 FAXCQ5TGI0 409 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 NAPEPLDQ6IQ20 393 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ARHGAP36Q6ZRI8 547 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 CIR1Q86X95 450 aaPredicted RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 ARID3BQ8IVW6 561 aaPredicted RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 BBS7Q8IWZ6 715 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 CNTD1Q8N815 330 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 USP33Q8TEY7 942 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 PABPC5Q96DU9 382 aaKnown RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 MYEOVQ96EZ4 313 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 PWWP2AQ96N64 755 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 TMEM109Q9BVC6 243 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ACE2Q9BYF1 805 aaPredicted RBP16.31■□□□□ 0.2
NUP54-214ENST00000514307 CEP41Q9BYV8 373 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 SLC25A51Q9H1U9 297 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ZNF576Q9H609 170 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 PPCSQ9HAB8 311 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 ATP13A1Q9HD20 1204 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 GDE1Q9NZC3 331 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 NINJ2Q9NZG7 142 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 GREB1Q4ZG55 1949 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 PLXNA4Q9HCM2 1894 aa16.31■□□□□ 0.2
NUP54-214ENST00000514307 LAMA3Q16787 3333 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 RFXAPO00287 272 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 IVLP07476 585 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 NFKB1P19838 968 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 ACVRL1P37023 503 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 SLC20A2Q08357 652 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 ZBTB17Q13105 803 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 CDH18Q13634 790 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 SLC5A9Q2M3M2 681 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 CEP85LQ5SZL2 805 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 RARS2Q5T160 578 aaKnown RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 CES5AQ6NT32 575 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 ANKRD54Q6NXT1 300 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 C3orf62Q6ZUJ4 267 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 METTL3Q86U44 580 aaKnown RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 KRT222Q8N1A0 295 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 ATP11CQ8NB49 1132 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 FIBINQ8TAL6 211 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 E2F7Q96AV8 911 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 PRICKLE1Q96MT3 831 aaPredicted RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 SERPINB12Q96P63 405 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 FEM1AQ9BSK4 669 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 STMN4Q9H169 189 aaPredicted RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 VPS45Q9NRW7 570 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 DNAJC17Q9NVM6 304 aaKnown RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 THG1LQ9NWX6 298 aaKnown RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 BFARQ9NZS9 450 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 UBA2Q9UBT2 640 aaPredicted RBP16.3■□□□□ 0.2
NUP54-214ENST00000514307 SEPT3Q9UH03 358 aa16.3■□□□□ 0.2
NUP54-214ENST00000514307 CXorf51AA0A1B0GTR3 108 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 EPOPA6NHQ4 379 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 TMEM63AO94886 807 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 ACSL3O95573 720 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 CD68P34810 354 aaPredicted RBP16.29■□□□□ 0.2
NUP54-214ENST00000514307 MPP3Q13368 585 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 ADAM15Q13444 863 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 ZNF235Q14590 738 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 INO80DQ53TQ3 878 aaPredicted RBP16.29■□□□□ 0.2
NUP54-214ENST00000514307 RETSATQ6NUM9 610 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 CAND1Q86VP6 1230 aaKnown RBP16.29■□□□□ 0.2
NUP54-214ENST00000514307 MFN1Q8IWA4 741 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 IRF7Q92985 503 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 C9orf72Q96LT7 481 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 C2orf49Q9BVC5 232 aaPredicted RBP16.29■□□□□ 0.2
NUP54-214ENST00000514307 SLC2A11Q9BYW1 496 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 SMG9Q9H0W8 520 aaKnown RBP16.29■□□□□ 0.2
NUP54-214ENST00000514307 VPS37BQ9H9H4 285 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 NFS1Q9Y697 457 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 MYO16Q9Y6X6 1858 aa16.29■□□□□ 0.2
NUP54-214ENST00000514307 A0A0D9SEW6 157 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 AGPSO00116 658 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 TCEA3O75764 348 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 PEX11BO96011 259 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 CPP00450 1065 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 CEBPBP17676 345 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 PLK1P53350 603 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 SLC10A7Q0GE19 358 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 HYAL1Q12794 435 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 CBX2Q14781 532 aaPredicted RBP16.28■□□□□ 0.2
NUP54-214ENST00000514307 TCEAL5Q5H9L2 206 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 FYB2Q5VWT5 728 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ARMC3Q5W041 872 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 OTOP3Q7RTS5 596 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ANKMY2Q8IV38 441 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 KLHDC8BQ8IXV7 354 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ADGRG2Q8IZP9 1017 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 CNPY4Q8N129 248 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 DNAAF3Q8N9W5 541 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 FBXO36Q8NEA4 188 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 OR7D4Q8NG98 312 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ITFG1Q8TB96 612 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 SMARCD2Q92925 531 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ACDQ96AP0 544 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 ZSWIM3Q96MP5 696 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 EBNA1BP2Q99848 306 aaKnown RBP16.28■□□□□ 0.2
NUP54-214ENST00000514307 POLR1EQ9GZS1 481 aaKnown RBP16.28■□□□□ 0.2
NUP54-214ENST00000514307 NT5MQ9NPB1 228 aa16.28■□□□□ 0.2
NUP54-214ENST00000514307 OBP2AQ9NY56 170 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms