RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 PSMG2Q969U7 264 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 SIGLEC10Q96LC7 697 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 MYRFLQ96LU7 910 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 EMILIN2Q9BXX0 1053 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 STK39Q9UEW8 545 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 ARL2BPQ9Y2Y0 163 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 PCDHA11Q9Y5I1 949 aa12.42□□□□□ -0.42
HDAC6-230ENST00000488543 SLC12A8A0AV02 714 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 EPOPA6NHQ4 379 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 WASH4PA8MWX3 477 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 GOLGA8RI6L899 631 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 GLUD1P00367 558 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 EPCAMP16422 314 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 GJA1P17302 382 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 KRT15P19012 456 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 CD68P34810 354 aaPredicted RBP12.41□□□□□ -0.42
HDAC6-230ENST00000488543 PHBP35232 272 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 KCNQ1P51787 676 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 ERVK-21P61565 698 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 BNIP1Q12981 228 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 VEPH1Q14D04 833 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 RASA2Q15283 850 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 SLC1A5Q15758 541 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 MS4A13Q5J8X5 152 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 ADGRD2Q7Z7M1 963 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 MPP5Q8N3R9 675 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 PDCD7Q8N8D1 485 aaKnown RBP12.41□□□□□ -0.42
HDAC6-230ENST00000488543 RTL3Q8N8U3 475 aaKnown RBP12.41□□□□□ -0.42
HDAC6-230ENST00000488543 TSGA13Q96PP4 275 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 SLC22A12Q96S37 553 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 PITPNM3Q9BZ71 974 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 SLC39A8Q9C0K1 460 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 MYLK2Q9H1R3 596 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 CATSPERBQ9H7T0 1116 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 GKN1Q9NS71 199 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 MPP6Q9NZW5 540 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 PRKAG3Q9UGI9 489 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 FETUBQ9UGM5 382 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 RWDD3Q9Y3V2 267 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 TTLL3Q9Y4R7 772 aa12.41□□□□□ -0.42
HDAC6-230ENST00000488543 CCL16O15467 120 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 COCHO43405 550 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 RB1P06400 928 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 TARSP26639 723 aaKnown RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 CDK16Q00536 496 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 CREMQ03060 361 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF697Q5TEC3 545 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 PID1Q7Z2X4 250 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 MAGEB18Q96M61 343 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 FERMT1Q9BQL6 677 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 TRABDQ9H4I3 376 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 NOL6Q9H6R4 1146 aaKnown RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 XAB2Q9HCS7 855 aaKnown RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 HCFC1R1Q9NWW0 138 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 KLHL8Q9P2G9 620 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 SLC24A2Q9UI40 661 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 TCRBV9S1A1TA0A576 114 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 H3BNC9 293 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 SCAMP3O14828 347 aaKnown RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 ZBTB24O43167 697 aaPredicted RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 MTSS1O43312 755 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 APOEP02649 317 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 EZRP15311 586 aaKnown RBP12.4□□□□□ -0.42
HDAC6-230ENST00000488543 ATP5DP30049 168 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF33AQ06730 810 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 SNX30Q5VWJ9 437 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 TXNDC8Q6A555 127 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 GAREM2Q75VX8 874 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 TRABD2AQ86V40 505 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 ZNF276Q8N554 614 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 ATP6V0D2Q8N8Y2 350 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 GDPD5Q8WTR4 605 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 LRRC39Q96DD0 335 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 CFAP36Q96G28 342 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 PPCSQ9HAB8 311 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 IL21Q9HBE4 155 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 TRPM5Q9NZQ8 1165 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 VANGL2Q9ULK5 521 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 OBSL1O75147 1896 aa12.4□□□□□ -0.42
HDAC6-230ENST00000488543 IGLV3-10A0A075B6K4 115 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 FAM47DPA6NHR8 397 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 LRG1P02750 347 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 F11P03951 625 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 MLNP12872 115 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 GEMIN4P57678 1058 aaKnown RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 COG7P83436 770 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 UBE3AQ05086 875 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 RING1Q06587 406 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 TEX44Q53QW1 395 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 LRRC8BQ6P9F7 803 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ZNF449Q6P9G9 518 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 LZTR1Q8N653 840 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 TTC16Q8NEE8 873 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 NSMCE1Q8WV22 266 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 OVCA2Q8WZ82 227 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ERP27Q96DN0 273 aa12.39□□□□□ -0.43
HDAC6-230ENST00000488543 ZNF419Q96HQ0 510 aaPredicted RBP12.39□□□□□ -0.43
HDAC6-230ENST00000488543 BTN2A3PQ96KV6 586 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms