RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 POM121L1PQ3SYA9 428 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 PLK5Q496M5 336 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 ARMCX6Q7L4S7 300 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 KIAA1328Q86T90 577 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 ARHGAP12Q8IWW6 846 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 TMEFF1Q8IYR6 380 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 UMODL1-AS1Q8N2C9 162 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 KDM1BQ8NB78 822 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 CHST14Q8NCH0 376 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 LRRN4Q8WUT4 740 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 TSC1Q92574 1164 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 CALN1Q9BXU9 219 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 DUSP15Q9H1R2 295 aaPredicted RBP11.91□□□□□ -0.5
CUX1-207ENST00000465461 RSPH9Q9H1X1 276 aaPredicted RBP11.91□□□□□ -0.5
CUX1-207ENST00000465461 LRRC19Q9H756 370 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 ITM2CQ9NQX7 267 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 HS3ST2Q9Y278 367 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 ALG6Q9Y672 507 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 NUP205Q92621 2012 aa11.91□□□□□ -0.5
CUX1-207ENST00000465461 TARSL2A2RTX5 802 aaKnown RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 MID1O15344 667 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 MAP3K13O43283 966 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 GFRA3O60609 400 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 ZNF821O75541 412 aaPredicted RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 IPO7O95373 1038 aaKnown RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 MAP3K6O95382 1288 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 IL1BP01584 269 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 CTSLP07711 333 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 ACADMP11310 421 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 KDELR1P24390 212 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 GKP32189 559 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 HTR7P34969 479 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 HCAR3P49019 387 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 MRE11P49959 708 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 SERPINH1P50454 418 aaKnown RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 TPMTP51580 245 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 VAV2P52735 878 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 SERINC3Q13530 473 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 LLGL1Q15334 1064 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 CCDC6Q16204 474 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 RETSATQ6NUM9 610 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 C22orf39Q6P5X5 142 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 LRRC8AQ8IWT6 810 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 TPCN2Q8NHX9 752 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 PCDH19Q8TAB3 1148 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 FAM71BQ8TC56 605 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 RNF25Q96BH1 459 aaPredicted RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 TM6SF2Q9BZW4 377 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 RETREG1Q9H6L5 497 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 LUC7LQ9NQ29 371 aaKnown RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 USP36Q9P275 1121 aaKnown RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 NYNRINQ9P2P1 1898 aaKnown RBP11.9□□□□□ -0.5
CUX1-207ENST00000465461 SERGEFQ9UGK8 458 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 SARDHQ9UL12 918 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 HPCAL4Q9UM19 191 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 ABCA7Q8IZY2 2146 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 CHD5Q8TDI0 1954 aa11.9□□□□□ -0.5
CUX1-207ENST00000465461 A0A0A6YYK5 440 aaPredicted RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 A0A1W2PP55 124 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 MACROD2A1Z1Q3 448 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 LRRD1A4D1F6 860 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 SPOPO43791 374 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 DNTTP04053 509 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 KRT1P04264 644 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 KRT7P08729 469 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 SLC8A1P32418 973 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 ETFBP38117 255 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 MARCKSL1P49006 195 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 VASPP50552 380 aaPredicted RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 NDST2P52849 883 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 YBEYP58557 167 aaPredicted RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 RPL6Q02878 288 aaKnown RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 CYTH1Q15438 398 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 CST6Q15828 149 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 PARP15Q460N3 678 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 ANKRD20A8PQ5CZ79 823 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 FAM182AQ5T1J6 154 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 ATXN7L2Q5T6C5 722 aaPredicted RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 AFMIDQ63HM1 303 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 ZNF776Q68DI1 518 aaPredicted RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 TMCO3Q6UWJ1 677 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 DPY19L3Q6ZPD9 716 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 OR2A12Q8NGT7 310 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 OR6K2Q8NGY2 324 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 GANCQ8TET4 914 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 TOE1Q96GM8 510 aaKnown RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 SPACA7Q96KW9 195 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 HINFPQ9BQA5 517 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 PABPC3Q9H361 631 aaKnown RBP11.89□□□□□ -0.51
CUX1-207ENST00000465461 LCMT1Q9UIC8 334 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 RAB23Q9ULC3 237 aa11.89□□□□□ -0.51
CUX1-207ENST00000465461 ARHGAP42A6NI28 874 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 C3orf70A6NLC5 250 aaPredicted RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 PJA2O43164 708 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 RNASEH1O60930 286 aaKnown RBP11.88□□□□□ -0.51
CUX1-207ENST00000465461 ZNF217O75362 1048 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 TMCC1O94876 653 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 CD6P30203 668 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 CHRNA3P32297 505 aa11.88□□□□□ -0.51
CUX1-207ENST00000465461 ACSL1P33121 698 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms