RNA–Protein interactions for RNA: ENST00000454240.1

SMARCC1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 3

Gene SMARCC1, Length 636 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-203ENST00000454240 DAAM2Q86T65 1068 aa28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 METTL3Q86U44 580 aaKnown RBP28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 GAB3Q8WWW8 586 aa28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 ANP32BQ92688 251 aaKnown RBP28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 FAF2Q96CS3 445 aa28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 CALN1Q9BXU9 219 aa28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 RSPH9Q9H1X1 276 aaPredicted RBP28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 TRIM10Q9UDY6 481 aa28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 MFHAS1Q9Y4C4 1052 aa28.58■■■□□ 2.17
SMARCC1-203ENST00000454240 NAP1L1P55209 391 aaKnown RBP28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 USP39Q53GS9 565 aaKnown RBP28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 ANKRD20A8PQ5CZ79 823 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 ZFYVE27Q5T4F4 411 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 TMCO3Q6UWJ1 677 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 PDLIM2Q96JY6 352 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 FAM129BQ96TA1 746 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 SEMA4AQ9H3S1 761 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 DDX56Q9NY93 547 aaKnown RBP28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 ACTL7AQ9Y615 435 aa28.57■■■□□ 2.16
SMARCC1-203ENST00000454240 ZSCAN5CA6NGD5 496 aaPredicted RBP28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 C3orf70A6NLC5 250 aaPredicted RBP28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 PROB1E7EW31 1015 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 PSTPIP1O43586 416 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 RPP40O75818 363 aaKnown RBP28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 P2RY2P41231 377 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 GEMIN4P57678 1058 aaKnown RBP28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 VSIG1Q86XK7 387 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 ZNF354CQ86Y25 554 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 PCDH19Q8TAB3 1148 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 PRCCQ92733 491 aaPredicted RBP28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 SIPA1Q96FS4 1042 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 CEP44Q9C0F1 390 aa28.56■■■□□ 2.16
SMARCC1-203ENST00000454240 ARHGAP42A6NI28 874 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 ZNF487B1APH4 448 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 NRDCO43847 1150 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 ZNF821O75541 412 aaPredicted RBP28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 PAPOLAP51003 745 aaKnown RBP28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 RPS14P62263 151 aaKnown RBP28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 IFI16Q16666 785 aaKnown RBP28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 MAP7D1Q3KQU3 841 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 KIAA1324Q6UXG2 1013 aaKnown RBP28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 Q6ZVU0 165 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 STK40Q8N2I9 435 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 LRRC57Q8N9N7 239 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 RLN3Q8WXF3 142 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 PHOX2BQ99453 314 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 EPC1Q9H2F5 836 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 SPAG17Q6Q759 2223 aa28.55■■■□□ 2.16
SMARCC1-203ENST00000454240 LRRD1A4D1F6 860 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 GRID2IPA4D2P6 1211 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 ZNF217O75362 1048 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 TNNT1P13805 278 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 BYSLQ13895 437 aaKnown RBP28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 ELAVL3Q14576 367 aaKnown RBP28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 C22orf39Q6P5X5 142 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 TP53INP2Q8IXH6 220 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 NETO2Q8NC67 525 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 KIAA1524Q8TCG1 905 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 ITM2CQ9NQX7 267 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 USP36Q9P275 1121 aaKnown RBP28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 INVSQ9Y283 1065 aa28.54■■■□□ 2.16
SMARCC1-203ENST00000454240 MACROD2A1Z1Q3 448 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 SERPINB6P35237 376 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 ZBTB16Q05516 673 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 PAFAH1B3Q15102 231 aaKnown RBP28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 INO80DQ53TQ3 878 aaPredicted RBP28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 ZNF776Q68DI1 518 aaPredicted RBP28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 LEKR1Q6ZMV7 388 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 PQLC3Q8N755 202 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 OR2A12Q8NGT7 310 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 CASKIN2Q8WXE0 1202 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 ISG20Q96AZ6 181 aaKnown RBP28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 RNF157Q96PX1 679 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 TSGA10Q9BZW7 698 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 PDFQ9HBH1 243 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 FCF1Q9Y324 198 aaKnown RBP28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 CEP192Q8TEP8 1941 aa28.53■■■□□ 2.16
SMARCC1-203ENST00000454240 J3KR12 359 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 MCF2LO15068 1137 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 PRAMEF11O60813 436 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 RNASEH1O60930 286 aaKnown RBP28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 KRT1P04264 644 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 SIM2Q14190 667 aaPredicted RBP28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 NCBP2-AS2Q69YL0 99 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 ZNF662Q6ZS27 426 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 RNF10Q8N5U6 811 aaKnown RBP28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 PCDH20Q8N6Y1 951 aaKnown RBP28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 FRMD1Q8N878 549 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 CD93Q9NPY3 652 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 ABCA7Q8IZY2 2146 aa28.52■■■□□ 2.16
SMARCC1-203ENST00000454240 DFFAO00273 331 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 ALOX15BO15296 676 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 IGLV3-19P01714 112 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 CCDC175P0C221 793 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 MMAAQ8IVH4 418 aaKnown RBP28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 PLPP6Q8IY26 295 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 KATNAL2Q8IYT4 538 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 SUMF1Q8NBK3 374 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 OR8D1Q8WZ84 308 aa28.51■■■□□ 2.15
SMARCC1-203ENST00000454240 RNF25Q96BH1 459 aaPredicted RBP28.51■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms