RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 TTC7BQ86TV6 843 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 ADAM2Q99965 735 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 TKTL2Q9H0I9 626 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SLC17A6Q9P2U8 582 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 ATXN10Q9UBB4 475 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 OR12D3Q9UGF7 316 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PADI3Q9ULW8 664 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 MAGED2Q9UNF1 606 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 DNAJC16Q9Y2G8 782 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 FAM72CH0Y354 149 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 RPLP2P05387 115 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 CTGFP29279 349 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 CCND3P30281 292 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PDE1CQ14123 709 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 CLPPQ16740 277 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 FAM72AQ5TYM5 149 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 FOXB2Q5VYV0 432 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 FAM91A1Q658Y4 838 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 FAM72DQ6L9T8 149 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 RWDD4Q6NW29 188 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SLC2A7Q6PXP3 512 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 C4orf50Q6ZRC1 276 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 NEK10Q6ZWH5 1172 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 BNIPLQ7Z465 357 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 FAM72BQ86X60 149 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PIWIL2Q8TC59 973 aaKnown RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 HASPINQ8TF76 798 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 SEZ6LQ9BYH1 1024 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 ZNF395Q9H8N7 513 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-204ENST00000392003 TAGLN3Q9UI15 199 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 ASB3Q9Y575 518 aa9.83□□□□□ -0.84
COL6A3-204ENST00000392003 PDCD11Q14690 1871 aaKnown RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ARHGEF37A1IGU5 675 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ARHGAP42A6NI28 874 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 MEIS3P2A8K0S8 358 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ZBTB24O43167 697 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ENTPD5O75356 428 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 LUC7L3O95232 432 aaKnown RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 CPA2P48052 419 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 CCDC153Q494R4 210 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 DNAL1Q4LDG9 190 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 TEX44Q53QW1 395 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 CFAP157Q5JU67 520 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 KIAA0319Q5VV43 1072 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 NAPEPLDQ6IQ20 393 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 TMPRSS6Q8IU80 811 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 IRGQQ8WZA9 623 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ABTB1Q969K4 478 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 HDAC11Q96DB2 347 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 PGAP3Q96FM1 320 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ATXN7L3BQ96GX2 97 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 GBA3Q9H227 469 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 WDR6Q9NNW5 1121 aaKnown RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 TAS2R1Q9NYW7 299 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 MID2Q9UJV3 735 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 CROTQ9UKG9 612 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 PDLIM1O00151 329 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 SNNO75324 88 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 JCHAINP01591 159 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ALDOAP04075 364 aaKnown RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 FYNP06241 537 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 HNRNPCP07910 306 aaKnown RBP eCLIP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 KDSRQ06136 332 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 DEFB115Q30KQ5 88 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 C6orf183Q5T699 404 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 LCA5Q86VQ0 697 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 TP53INP2Q8IXH6 220 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 PEX5LQ8IYB4 626 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 THEM5Q8N1Q8 247 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 MYO1HQ8N1T3 1032 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 TTC8Q8TAM2 541 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 MYLPFQ96A32 169 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 PRR11Q96HE9 360 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 MIPEPQ99797 713 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 SIK2Q9H0K1 926 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 C20orf96Q9NUD7 363 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 NKX1-2Q9UD57 310 aaPredicted RBP9.82□□□□□ -0.84
COL6A3-204ENST00000392003 SORCS3Q9UPU3 1222 aa9.82□□□□□ -0.84
COL6A3-204ENST00000392003 ARL5CA6NH57 179 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 USP1O94782 785 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 TOP3BO95985 862 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 SERPINA6P08185 405 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 TPBGLP0DKB5 382 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 RALBP11234 206 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CPA3P15088 417 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 NFKB1P19838 968 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 ENDOUP21128 410 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 YY1P25490 414 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CDK7P50613 346 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 PPP2R5DQ14738 602 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 ANKRD20A4Q4UJ75 823 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 DCLRE1AQ6PJP8 1040 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 GPRIN1Q7Z2K8 1008 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 LINC00523Q86TU6 105 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 DCLK2Q8N568 766 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 CAPNS2Q96L46 248 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 FAM161BQ96MY7 647 aa9.81□□□□□ -0.84
COL6A3-204ENST00000392003 STN1Q9H668 368 aaKnown RBP9.81□□□□□ -0.84
COL6A3-204ENST00000392003 AGO3Q9H9G7 860 aaKnown RBP9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms