RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 PRH1P02810 166 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 PSEN2P49810 448 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 GMPSP49915 693 aaPredicted RBP12.23□□□□□ -0.45
PCF11-201ENST00000298281 PLEKHH3Q7Z736 793 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 TREML1Q86YW5 311 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 TBCBQ99426 244 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 PRDM16Q9HAZ2 1276 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 ITGA11Q9UKX5 1188 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 ZDHHC9Q9Y397 364 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 CCDC85CA6NKD9 419 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 CCR1P32246 355 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 MAGEA2P43356 314 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 KIF2BQ8N4N8 673 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 ELOVL2Q9NXB9 296 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 PHF24Q9UPV7 400 aa12.23□□□□□ -0.45
PCF11-201ENST00000298281 ANKDD1BA6NHY2 528 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 PSMD9O00233 223 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 OR5F1O95221 314 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 ZNF37AP17032 561 aaPredicted RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 TPP2P29144 1249 aaPredicted RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 PUS10Q3MIT2 529 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 ZNF605Q86T29 641 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 ACOT1Q86TX2 421 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 SUN3Q8TAQ9 357 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 GIPC3Q8TF64 312 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 ABHD5Q8WTS1 349 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 GSDMCQ9BYG8 508 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 MTMR12Q9C0I1 747 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 AASDHPPTQ9NRN7 309 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 PSMD13Q9UNM6 376 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 CCDC182A6NF36 153 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 RAD51BO15315 384 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 EN1Q05925 392 aaPredicted RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 CCDC33Q8N5R6 958 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 ZNF285Q96NJ3 590 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 KLHL4Q9C0H6 718 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 TAGLN3Q9UI15 199 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 SPATA31A6Q5VVP1 1343 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 A0A087WZ62 844 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 C15orf38-AP3S2A0A0A6YYH1 394 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 A0A1W2PQ72 361 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 OTOL1A6NHN0 477 aaPredicted RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 MAPTP10636 758 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 SREBF1P36956 1147 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 MASP1P48740 699 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 DET1Q7L5Y6 550 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 ARPINQ7Z6K5 226 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 SLC40A1Q9NP59 571 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 CKLFQ9UBR5 152 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 SLC28A2O43868 658 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 FASP25445 335 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 TARSP26639 723 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 MAT2BQ9NZL9 334 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 VANGL2Q9ULK5 521 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 PQBP1O60828 265 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 RASGRP1O95267 797 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 CELF2O95319 508 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 S100A2P29034 98 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 CRABP2P29373 138 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 SETD9Q8NE22 299 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 PPP1R13LQ8WUF5 828 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 CKAP2Q8WWK9 683 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 KCNB2Q92953 911 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 NOD2Q9HC29 1040 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 NT5MQ9NPB1 228 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 RNF17Q9BXT8 1623 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 QRICH2Q9H0J4 1663 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 FAM205CA6NFA0 338 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 FOXN3O00409 490 aaPredicted RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 CAMTA2O94983 1202 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 MYL9P24844 172 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 C1QBPQ07021 282 aaKnown RBP12.22□□□□□ -0.45
PCF11-201ENST00000298281 EFEMP1Q12805 493 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 MARC1Q5VT66 337 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 TRHDEQ9UKU6 1024 aa12.22□□□□□ -0.45
PCF11-201ENST00000298281 SPHKAPQ2M3C7 1700 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 HYKKA2RU49 373 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 PPP1R3GB7ZBB8 358 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 ALDH2P05091 517 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 COX7A2P14406 83 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 ZNF7P17097 686 aaPredicted RBP12.21□□□□□ -0.45
PCF11-201ENST00000298281 CYP2F1P24903 491 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 LRPAP1P30533 357 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 POM121L1PQ3SYA9 428 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 ZNF611Q8N823 705 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 TMEM176AQ96HP8 235 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 FAM118BQ9BPY3 351 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 TMEM39AQ9NV64 488 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 NTSP30990 170 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 SLC26A3P40879 764 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 ZBTB49Q6ZSB9 765 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 VCPIP1Q96JH7 1222 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 GRIP2Q9C0E4 1043 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 CCDC86Q9H6F5 360 aaKnown RBP12.21□□□□□ -0.45
PCF11-201ENST00000298281 PCDH9Q9HC56 1237 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 IQGAP3Q86VI3 1631 aa12.21□□□□□ -0.45
PCF11-201ENST00000298281 KPNA3O00505 521 aaPredicted RBP12.21□□□□□ -0.45
PCF11-201ENST00000298281 DDX3XO00571 662 aaKnown RBP eCLIP12.21□□□□□ -0.45
PCF11-201ENST00000298281 POLR2LP62875 67 aaKnown RBP12.21□□□□□ -0.45
PCF11-201ENST00000298281 NAA30Q147X3 362 aaPredicted RBP12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms