RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 SIN3BO75182 1162 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 TPM3P06753 285 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 EPHX1P07099 455 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 SRCP12931 536 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 OR1E1P30953 314 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 ACVRL1P37023 503 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 PTGER3P43115 390 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 GNA12Q03113 381 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 ZBTB16Q05516 673 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 SULT2A1Q06520 285 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 ERMARDQ5T6L9 678 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 DCUN1D2Q6PH85 259 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 SERPINA13PQ6UXR4 307 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 LRRC31Q6UY01 552 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 TMEM139Q8IV31 216 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 RTL3Q8N8U3 475 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 DCAF4L2Q8NA75 395 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 OR7D4Q8NG98 312 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 FAM174AQ8TBP5 190 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 DNASE2BQ8WZ79 361 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 ARHGEF2Q92974 986 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 ZNF653Q96CK0 615 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 TRIM11Q96F44 468 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 BTBD6Q96KE9 485 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 SNRNP25Q9BV90 132 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 FBRSQ9HAH7 460 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 PRDM16Q9HAZ2 1276 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 MRPL47Q9HD33 250 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 SARDHQ9UL12 918 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 PPM1HQ9ULR3 514 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 PCDHGA5Q9Y5G8 931 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 ACTL7AQ9Y615 435 aa9.38□□□□□ -0.91
HMGN1-201ENST00000288344 CNOT1A5YKK6 2376 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 NYNRINQ9P2P1 1898 aaKnown RBP9.38□□□□□ -0.91
HMGN1-201ENST00000288344 CABIN1Q9Y6J0 2220 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 TYW5A2RUC4 315 aaKnown RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 EIF3CLB5ME19 914 aaKnown RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 AKR1B15C9JRZ8 316 aaPredicted RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 MCF2LO15068 1137 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 ZNF217O75362 1048 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 CTSLP07711 333 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 TMEM253P0C7T8 217 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 ZNF806P0C7X5 589 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 RARAP10276 462 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 PSMA2P25787 234 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 HTR7P34969 479 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 DRD3P35462 400 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 MAPKAPK2P49137 400 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 SLC20A2Q08357 652 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 DPYSQ14117 519 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 PIGHQ14442 188 aaPredicted RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 DLG2Q15700 870 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 CSRP2Q16527 193 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 DPYSL2Q16555 572 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 LPAL2Q16609 132 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 ARL13BQ3SXY8 428 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 TDRD12Q587J7 1177 aaKnown RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 C6orf118Q5T5N4 469 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 TFAP2DQ7Z6R9 452 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 C11orf74Q86VG3 221 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 ARHGAP12Q8IWW6 846 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 ARMC2Q8NEN0 867 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 CADM4Q8NFZ8 388 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 OR2A12Q8NGT7 310 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 SIPA1Q96FS4 1042 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 PPP1R9BQ96SB3 815 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 KCTD15Q96SI1 283 aaPredicted RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 EIF3CQ99613 913 aaKnown RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 TRIM5Q9C035 493 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 SLC6A16Q9GZN6 736 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 MAGEH1Q9H213 219 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 RXFP3Q9NSD7 469 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 GPATCH2LQ9NWQ4 482 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 CWC15Q9P013 229 aaKnown RBP9.37□□□□□ -0.91
HMGN1-201ENST00000288344 MYO1AQ9UBC5 1043 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 SERGEFQ9UGK8 458 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 PILRBQ9UKJ0 227 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 USP18Q9UMW8 372 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 SCINQ9Y6U3 715 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 PCNX2A6NKB5 2137 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 PCDH15Q96QU1 1955 aa9.37□□□□□ -0.91
HMGN1-201ENST00000288344 ASCC3Q8N3C0 2202 aaKnown RBP9.36□□□□□ -0.91
HMGN1-201ENST00000288344 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 EDDM13A0A1B0GTR0 161 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 METTL12A8MUP2 240 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 KDELR3O43731 214 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 SYNCRIPO60506 623 aaKnown RBP9.36□□□□□ -0.91
HMGN1-201ENST00000288344 PEX11BO96011 259 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 RHOCP08134 193 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 H2AFZP0C0S5 128 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 ACSL1P33121 698 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 NUMBP49757 651 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 METAP1P53582 386 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 HADHBP55084 474 aaKnown RBP9.36□□□□□ -0.91
HMGN1-201ENST00000288344 YBEYP58557 167 aaPredicted RBP9.36□□□□□ -0.91
HMGN1-201ENST00000288344 ATP13A4Q4VNC1 1196 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 FNDC3BQ53EP0 1204 aaKnown RBP9.36□□□□□ -0.91
HMGN1-201ENST00000288344 BOLA3Q53S33 107 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 SCYL2Q6P3W7 929 aa9.36□□□□□ -0.91
HMGN1-201ENST00000288344 USP30Q70CQ3 517 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms