RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 FSD1LQ9BXM9 530 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 RBM22Q9NW64 420 aaKnown RBP eCLIP16.93■□□□□ 0.33e-6■■■■□ 22.6
VPS54-201ENST00000272322 STX16-NPEPL1H3BU86 382 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 SERPINA6P08185 405 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 HDCP19113 662 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 PTPRCAPQ14761 206 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 BTBD8Q5XKL5 378 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 PHF21BQ96EK2 531 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 LENG8Q96PV6 779 aaPredicted RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 SUDS3Q9H7L9 328 aaPredicted RBP16.93■□□□□ 0.3
VPS54-201ENST00000272322 PADI3Q9ULW8 664 aa16.93■□□□□ 0.3
VPS54-201ENST00000272322 KLF11O14901 512 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 PIGNO95427 931 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 AHSGP02765 367 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 GRK4P32298 578 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 C14orf80Q86SX3 495 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 ARHGAP24Q8N264 748 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 ATPAF2Q8N5M1 289 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 FCRL2Q96LA5 508 aaPredicted RBP16.92■□□□□ 0.3
VPS54-201ENST00000272322 SOX13Q9UN79 622 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 IQCA1LA6NCM1 817 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 MAP3K7O43318 606 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 PAGE1O75459 146 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 ENO3P13929 434 aaPredicted RBP16.92■□□□□ 0.3
VPS54-201ENST00000272322 ZNF789Q5FWF6 425 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 ANKRD23Q86SG2 305 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 CASP10Q92851 521 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 NXNL1Q96CM4 212 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 CPNE1Q99829 537 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 TUBB6Q9BUF5 446 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 TLL2Q9Y6L7 1015 aa16.92■□□□□ 0.3
VPS54-201ENST00000272322 ALDH1A2O94788 518 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 PBX3P40426 434 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 GRIA4P48058 902 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 NUDT2P50583 147 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ADAM17P78536 824 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 MRPS6P82932 125 aaKnown RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 KRT72Q14CN4 511 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ARL13AQ5H913 290 aaPredicted RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 RABGAP1LQ5R372 815 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 EP400NLQ6ZTU2 488 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 SDCCAG8Q86SQ7 713 aaPredicted RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 OR6P1Q8NGX9 317 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ELMO2Q96JJ3 720 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ACE2Q9BYF1 805 aaPredicted RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 DNAI2Q9GZS0 605 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 TLE6Q9H808 572 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 GTSE1Q9NYZ3 720 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 TSR3Q9UJK0 312 aaKnown RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 OR51F1A6NGY5 319 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 GABRDO14764 452 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 GABRB3P28472 473 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ASPHQ12797 758 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 CSHL1Q14406 222 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 PAFAH1B3Q15102 231 aaKnown RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 ZNF470Q6ECI4 717 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ZNF467Q7Z7K2 595 aaPredicted RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 ZNF333Q96JL9 665 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 ZIC5Q96T25 663 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 SLC39A8Q9C0K1 460 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 TRMT13Q9NUP7 481 aaKnown RBP16.91■□□□□ 0.3
VPS54-201ENST00000272322 ATP6V1C1P21283 382 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 OVOS1Q6IE37 1185 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 LAYNQ6UX15 382 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 CEP97Q8IW35 865 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 SMARCD1Q96GM5 515 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 TSNARE1Q96NA8 513 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 SLC2A13Q96QE2 648 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 NDE1Q9NXR1 346 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 LRRC42Q9Y546 428 aa16.91■□□□□ 0.3
VPS54-201ENST00000272322 UNC80Q8N2C7 3258 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 ATP6AP2A0A1C7CYW4 349 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 ATP6AP2O75787 350 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 WFS1O76024 890 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 TM7SF2O76062 418 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 ANPEPP15144 967 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 SERPINB8P50452 374 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 LIMK2P53671 638 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 NME5P56597 212 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 KLC1Q07866 573 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 SLC39A12Q504Y0 691 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 TTC9BQ8N6N2 239 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS54-201ENST00000272322 NT5C3BQ969T7 300 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 CNGB3Q9NQW8 809 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 IGSF9Q9P2J2 1179 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 XPR1Q9UBH6 696 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 A0A088AWK7 358 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 BIRC5O15392 142 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 MLNP12872 115 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 AXLP30530 894 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 LHX1P48742 406 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 SPANXN3Q5MJ09 141 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 GRTP1Q5TC63 336 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 STEAP4Q687X5 459 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 C4orf22Q6V702 233 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 UPF1Q92900 1129 aaKnown RBP eCLIP16.9■□□□□ 0.3
VPS54-201ENST00000272322 TEKT5Q96M29 485 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 RTP3Q9BQQ7 232 aa16.9■□□□□ 0.3
VPS54-201ENST00000272322 TRPV6Q9H1D0 765 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms