RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 CXorf38Q8TB03 319 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 SLC35B2Q8TB61 432 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 SLC35F5Q8WV83 523 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 TBC1D31Q96DN5 1066 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 PHOX2BQ99453 314 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 PRRX2Q99811 253 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 SLC46A2Q9BY10 475 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 ROPN1BQ9BZX4 212 aaPredicted RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 KLC2Q9H0B6 622 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 ROPN1Q9HAT0 212 aaPredicted RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 THG1LQ9NWX6 298 aaKnown RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 TRPM5Q9NZQ8 1165 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 MARCOQ9UEW3 520 aaPredicted RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 MRPS17Q9Y2R5 130 aaKnown RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 MTF2Q9Y483 593 aaPredicted RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 UGT1A9O60656 530 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 FGF19O95750 216 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 ITGAVP06756 1048 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 POU2F2P09086 479 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 NPR3P17342 541 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 TPH1P17752 444 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 HDCP19113 662 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 WARSP23381 471 aaKnown RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 VSTM1Q6UX27 236 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 DTWD2Q8NBA8 298 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 BPIFB1Q8TDL5 484 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 UGT1A7Q9HAW7 530 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 UGT1A10Q9HAW8 530 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 UGT1A8Q9HAW9 530 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 GKN1Q9NS71 199 aa8.86□□□□□ -0.99
VPS4B-201ENST00000238497 UXTQ9UBK9 157 aaPredicted RBP8.86□□□□□ -0.99
VPS4B-201ENST00000238497 FAM47DPA6NHR8 397 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 YJEFN3A6XGL0 299 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 E7ENQ6 273 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 GABRDO14764 452 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 NCAM2O15394 837 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 ADRA1DP25100 572 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 ACTN3Q08043 901 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 E2F5Q15329 346 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 ANGPT1Q15389 498 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TRIM68Q6AZZ1 485 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 PRPF39Q86UA1 669 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 PACS2Q86VP3 889 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 MFSD6LQ8IWD5 586 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 FUKQ8N0W3 1084 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 RSPRY1Q96DX4 576 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 FAM111AQ96PZ2 611 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 EBF3Q9H4W6 596 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 SLC2A4RGQ9NR83 387 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 KLHL14Q9P2G3 628 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 ANK1P16157 1881 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 C3orf70A6NLC5 250 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 LAMTOR5O43504 91 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 GALR2O43603 387 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 METTL18O95568 372 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 PYGBP11216 843 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 EPHB2P29323 1055 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 CDH5P33151 784 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 GMPRP36959 345 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 GPX6P59796 221 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TCF15Q12870 199 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 SLC10A2Q12908 348 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 SLC1A5Q15758 541 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 POLNQ7Z5Q5 900 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 CMTM8Q8IZV2 173 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 MPP5Q8N3R9 675 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 SCAMP5Q8TAC9 235 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 FAM3CQ92520 227 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 FBXO32Q969P5 355 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 FUBP3Q96I24 572 aaKnown RBP eCLIP8.85□□□□□ -0.993e-7■■■□□ 17
VPS4B-201ENST00000238497 DNAI2Q9GZS0 605 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 IL21Q9HBE4 155 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 NPHS2Q9NP85 383 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TDP1Q9NUW8 608 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TXNDC16Q9P2K2 825 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 KIAA1257Q9ULG3 409 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TRIM33Q9UPN9 1127 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 CCL26Q9Y258 94 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 DRG1Q9Y295 367 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TRAV19A0A0A6YYK7 116 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TRIM49D1C9J1S8 452 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 DFFAO00273 331 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 EEF2KO00418 725 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 SUN1O94901 812 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TOP3BO95985 862 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 HMGA1P17096 107 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 EPHA5P54756 1037 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 GEMIN4P57678 1058 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 ENPEPQ07075 957 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TAF10Q12962 218 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 PCGF5Q86SE9 256 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 AGR3Q8TD06 166 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 TCP10LQ8TDR4 215 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 NKD2Q969F2 451 aaPredicted RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 LRRC3Q9BY71 257 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 UNKQ9C0B0 810 aaKnown RBP8.85□□□□□ -0.99
VPS4B-201ENST00000238497 LTB4R2Q9NPC1 389 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 ACSS2Q9NR19 701 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 SLC17A7Q9P2U7 560 aa8.85□□□□□ -0.99
VPS4B-201ENST00000238497 R4GN57 208 aa8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms