RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ANKRD20A1Q5TYW2 823 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 MARC1Q5VT66 337 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 ANKRD20A3Q5VUR7 823 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 TANGO2Q6ICL3 276 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 B4GALNT4Q76KP1 1039 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 METTL3Q86U44 580 aaKnown RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 NETO2Q8NC67 525 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 CASKIN2Q8WXE0 1202 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 MYLIPQ8WY64 445 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 SUSD6Q92537 303 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 PNKPQ96T60 521 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 FEM1AQ9BSK4 669 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 FOXP3Q9BZS1 431 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 POMKQ9H5K3 350 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 UBE2ZQ9H832 354 aaPredicted RBP15.58■□□□□ 0.08
TRIM28-209ENST00000597423 GOLGA6AQ9NYA3 693 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 EPS15L1Q9UBC2 864 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 TRANK1O15050 2925 aa15.58■□□□□ 0.08
TRIM28-209ENST00000597423 CXorf51AA0A1B0GTR3 108 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 BHMG1C9JSJ3 638 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 E7EVH7 732 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 NEDD8-MDP1E9PL57 170 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 KCNK1O00180 336 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PSMD3O43242 534 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PRAMEF11O60813 436 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 ETS1P14921 441 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 VAV1P15498 845 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PSMC3P17980 439 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 KCNA5P22460 613 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PTPN3P26045 913 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 HOXD9P28356 352 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 RPL21P46778 160 aaKnown RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 LMAN1P49257 510 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PLK1P53350 603 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 GDF10P55107 478 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 SARNPP82979 210 aaKnown RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 SLC20A2Q08357 652 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 DMC1Q14565 340 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 MORF4L2Q15014 288 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 DHCR24Q15392 516 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 CCDC85BQ15834 202 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PREPLQ4J6C6 727 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 LY6G5CQ5SRR4 150 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 FYB2Q5VWT5 728 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 IZUMO3Q5VZ72 239 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 RNF43Q68DV7 783 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 CXorf57Q6NSI4 855 aaKnown RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 RETSATQ6NUM9 610 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 RHBDF2Q6PJF5 856 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 POTEHQ6S545 545 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 TP53INP2Q8IXH6 220 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 PLCD3Q8N3E9 789 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 CPA6Q8N4T0 437 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 DEFB123Q8N688 67 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 CCDC110Q8TBZ0 833 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 MAML1Q92585 1016 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 BHMTQ93088 406 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 HLA-CQ95604 372 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 ACDQ96AP0 544 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 HINFPQ9BQA5 517 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 C2orf49Q9BVC5 232 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 ACE2Q9BYF1 805 aaPredicted RBP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 RBM22Q9NW64 420 aaKnown RBP eCLIP15.57■□□□□ 0.08
TRIM28-209ENST00000597423 VPS28Q9UK41 221 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 FAM50BQ9Y247 325 aa15.57■□□□□ 0.08
TRIM28-209ENST00000597423 A0A0D9SEW6 157 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 ESYT3A0FGR9 886 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 CCDC151A5D8V7 595 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 H3BQ06 376 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 DNALI1O14645 258 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 HOXC11O43248 304 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 ADH5P11766 374 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 TYRP14679 529 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 ACVRL1P37023 503 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 PLTPP55058 493 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 VSNL1P62760 191 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 FCHO2Q0JRZ9 810 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 WASHC5Q12768 1159 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 EML3Q32P44 896 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 PUS10Q3MIT2 529 aaKnown RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 PPP1R21Q6ZMI0 780 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 PPIL6Q8IXY8 311 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 OR7D4Q8NG98 312 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 ART4Q93070 314 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 NXPE3Q969Y0 559 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 RSPRY1Q96DX4 576 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 TEKT5Q96M29 485 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 LRRC3BQ96PB8 259 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 IL12RB2Q99665 862 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 TRMT61BQ9BVS5 477 aaKnown RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 FRMD8Q9BZ67 464 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 RAB6BQ9NRW1 208 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 PLK2Q9NYY3 685 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 IGSF9Q9P2J2 1179 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 UBA2Q9UBT2 640 aaPredicted RBP15.56■□□□□ 0.08
TRIM28-209ENST00000597423 CDH22Q9UJ99 828 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 DENND4CQ5VZ89 1909 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 NOTCH4Q99466 2003 aa15.56■□□□□ 0.08
TRIM28-209ENST00000597423 PRRC2BQ5JSZ5 2229 aaKnown RBP15.55■□□□□ 0.08
TRIM28-209ENST00000597423 OBSL1O75147 1896 aa15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms