RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 BAP1Q92560 729 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 VOPP1Q96AW1 172 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 PPP1R9BQ96SB3 815 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 C11orf70Q9BRQ4 267 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 MAGEB5Q9BZ81 275 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 SLC32A1Q9H598 525 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 PPARGC1AQ9UBK2 798 aaKnown RBP15.26■□□□□ 0.03
CLN3-213ENST00000565047 VPS51Q9UID3 782 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 VPS28Q9UK41 221 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 FNDC3AQ9Y2H6 1198 aaKnown RBP15.26■□□□□ 0.03
CLN3-213ENST00000565047 PAXBP1Q9Y5B6 917 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 EPG5Q9HCE0 2579 aa15.26■□□□□ 0.03
CLN3-213ENST00000565047 DOCK4Q8N1I0 1966 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 A0A1W2PPC4 97 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 SMAD6O43541 496 aaKnown RBP15.25■□□□□ 0.03
CLN3-213ENST00000565047 LATO43561 262 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 FSBPO95073 299 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 CD160O95971 181 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 WNT1P04628 370 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 CTSLP07711 333 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 GLDCP23378 1020 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 RFC1P35251 1148 aaPredicted RBP15.25■□□□□ 0.03
CLN3-213ENST00000565047 ADRA1BP35368 520 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 NNMTP40261 264 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 PTPN9P43378 593 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 PSMD8P48556 350 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 CCR5P51681 352 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 ATP11AP98196 1134 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 ANO6Q4KMQ2 910 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 PPP1R15BQ5SWA1 713 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 LAYNQ6UX15 382 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 STRADAQ7RTN6 431 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 DCAF4L2Q8NA75 395 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 BAHD1Q8TBE0 780 aaPredicted RBP15.25■□□□□ 0.03
CLN3-213ENST00000565047 OMDQ99983 421 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 OSBPL2Q9H1P3 480 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 GAREM1Q9H706 876 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 RTN4Q9NQC3 1192 aaKnown RBP15.25■□□□□ 0.03
CLN3-213ENST00000565047 ARHGAP20Q9P2F6 1191 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 PCOLCE2Q9UKZ9 415 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 ANKRD6Q9Y2G4 727 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 SNX11Q9Y5W9 270 aa15.25■□□□□ 0.03
CLN3-213ENST00000565047 A0A1W2PR77 199 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 ILVBLA1L0T0 632 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 FAM72CH0Y354 149 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 PLK4O00444 970 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 ALOX15BO15296 676 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 IL1BP01584 269 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 RHOCP08134 193 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 CDK11BP21127 795 aaKnown RBP15.24■□□□□ 0.03
CLN3-213ENST00000565047 CTSKP43235 329 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 TAS2R38P59533 333 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 RACK1P63244 317 aaKnown RBP15.24■□□□□ 0.03
CLN3-213ENST00000565047 SIM1P81133 766 aaPredicted RBP15.24■□□□□ 0.03
CLN3-213ENST00000565047 SFSWAPQ12872 951 aaKnown RBP15.24■□□□□ 0.03
CLN3-213ENST00000565047 FAM72AQ5TYM5 149 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 AGBL4Q5VU57 503 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 FAM72DQ6L9T8 149 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 WDR59Q6PJI9 974 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 IL27RAQ6UWB1 636 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 LRRC31Q6UY01 552 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 ZNF783Q6ZMS7 281 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 Q6ZVU0 165 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 TFAP2DQ7Z6R9 452 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 NLRP14Q86W24 1093 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 FAM72BQ86X60 149 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 NAXDQ8IW45 347 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 ANKRD20A12PQ8NF67 263 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 OR7D4Q8NG98 312 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 OR2A12Q8NGT7 310 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 SNX19Q92543 992 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 AGPAT1Q99943 283 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 ACE2Q9BYF1 805 aaPredicted RBP15.24■□□□□ 0.03
CLN3-213ENST00000565047 NDFIP2Q9NV92 336 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 ADAM22Q9P0K1 906 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 SLC25A13Q9UJS0 675 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 PCDHGB2Q9Y5G2 931 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 PLXNA2O75051 1894 aa15.24■□□□□ 0.03
CLN3-213ENST00000565047 CEP295Q9C0D2 2601 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 FAM221BA6H8Z2 402 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 LRRC72A6NJI9 287 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 SIGLEC16A6NMB1 481 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 VILLO15195 856 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 SLC7A4O43246 635 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 PLRG1O43660 514 aaKnown RBP15.23■□□□□ 0.03
CLN3-213ENST00000565047 SRGAP2O75044 1071 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 CER1O95813 267 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 KRT3P12035 628 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 SPINK2P20155 84 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 OR1E1P30953 314 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 PPP2CBP62714 309 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 PPP2CAP67775 309 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 KRT83P78385 493 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 ARF5P84085 180 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 FOXC1Q12948 553 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 HNRNPDQ14103 355 aaKnown RBP15.23■□□□□ 0.03
CLN3-213ENST00000565047 IQCB1Q15051 598 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 ZNF423Q2M1K9 1284 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 C6orf118Q5T5N4 469 aa15.23■□□□□ 0.03
CLN3-213ENST00000565047 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms