RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 CNPY3Q9BT09 278 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 TKTL2Q9H0I9 626 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 THAP2Q9H0W7 228 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 LUC7LQ9NQ29 371 aaKnown RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 SPTLC3Q9NUV7 552 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 ARHGEF38Q9NXL2 777 aa10.44□□□□□ -0.74
VPS28-204ENST00000526054 NYNRINQ9P2P1 1898 aaKnown RBP10.44□□□□□ -0.74
VPS28-204ENST00000526054 TP53BP1Q12888 1972 aaPredicted RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 TMEM131Q92545 1883 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 GOLGA6L7A0A1B0GV03 622 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 TMEM191CA6NGB0 347 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 SRRM3A6NNA2 597 aaPredicted RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 METTL12A8MUP2 240 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 BCAT2O15382 392 aaPredicted RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 TIMM44O43615 452 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 PAGE1O75459 146 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 IPO7O95373 1038 aaKnown RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 CYP1A2P05177 515 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 FTH1P19P0C7X4 201 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 FECHP22830 423 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 HLA-FP30511 346 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 SLC6A4P31645 630 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 GSDMDP57764 484 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 MS4A13Q5J8X5 152 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 RABGAP1LQ5R372 815 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 MPP7Q5T2T1 576 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 PIK3R6Q5UE93 754 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 TTC39BQ5VTQ0 682 aaPredicted RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 RFWD3Q6PCD5 774 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 CHST9Q7L1S5 443 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 RAB44Q7Z6P3 723 aaPredicted RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 FAM131BQ86XD5 332 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 LGI2Q8N0V4 545 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 AHI1Q8N157 1196 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 ZNF366Q8N895 744 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 OR2T3Q8NH03 318 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 CYB5D2Q8WUJ1 264 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 CENPIQ92674 756 aaPredicted RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 NCAPGQ9BPX3 1015 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 NUP85Q9BW27 656 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 PCED1AQ9H1Q7 454 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 ABCB8Q9NUT2 735 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 UVRAGQ9P2Y5 699 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 EIF2B4Q9UI10 523 aaKnown RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 XPO7Q9UIA9 1087 aaKnown RBP10.43□□□□□ -0.74
VPS28-204ENST00000526054 GGA2Q9UJY4 613 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 PLA2G4CQ9UP65 541 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 DMXL2Q8TDJ6 3036 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 DOCK4Q8N1I0 1966 aa10.43□□□□□ -0.74
VPS28-204ENST00000526054 TBL1XO60907 577 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 RNF8O76064 485 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 TMEM253P0C7T8 217 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 PABPC1P11940 636 aaKnown RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 AIF1P55008 147 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 HDAC4P56524 1084 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 OGDHQ02218 1023 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 CAMK2GQ13555 558 aaPredicted RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 ACAP1Q15027 740 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 SPA17Q15506 151 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 IL27RAQ6UWB1 636 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 LRRC31Q6UY01 552 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.42□□□□□ -0.744e-6■□□□□ 11.3
VPS28-204ENST00000526054 ZNF564Q8TBZ8 553 aaPredicted RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 SETD7Q8WTS6 366 aaKnown RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 ADAMTS14Q8WXS8 1223 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 NTAN1Q96AB6 310 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 ARHGEF26Q96DR7 871 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 PRICKLE1Q96MT3 831 aaPredicted RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 RPRD1AQ96P16 312 aaPredicted RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 HAPLN3Q96S86 360 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 PRMT1Q99873 361 aaKnown RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 BAG1Q99933 345 aaPredicted RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 SIK2Q9H0K1 926 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 TMEM245Q9H330 911 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 GAREM1Q9H706 876 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 FBRSQ9HAH7 460 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 IL21RQ9HBE5 538 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 TM7SF3Q9NS93 570 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 STIM2Q9P246 746 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 CTTNBP2NLQ9P2B4 639 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 IP6K2Q9UHH9 426 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 LCMT1Q9UIC8 334 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 ANAPC7Q9UJX3 599 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 INTUQ9ULD6 942 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 APOBEC2Q9Y235 224 aaKnown RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 FNDC3AQ9Y2H6 1198 aaKnown RBP10.42□□□□□ -0.74
VPS28-204ENST00000526054 HS3ST4Q9Y661 456 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 NUMA1Q14980 2115 aa10.42□□□□□ -0.74
VPS28-204ENST00000526054 FAM221BA6H8Z2 402 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 SOWAHDA6NJG2 315 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 EIF3CLB5ME19 914 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 MYO1FO00160 1098 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 LUC7L3O95232 432 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 LCA5LO95447 670 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 DNTTP04053 509 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 ATP5BP06576 529 aaKnown RBP10.41□□□□□ -0.74
VPS28-204ENST00000526054 ZNF883P0CG24 379 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 ACSL1P33121 698 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 ADRA1BP35368 520 aa10.41□□□□□ -0.74
VPS28-204ENST00000526054 DEKP35659 375 aaKnown RBP10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms